MirGeneDB 2.1

MirGeneDB ID

Dmo-Mir-9538

Family name MIR-9538 (all species)
Seed GAGAUCA
Species Fruit fly (Drosophila mojavensis)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) D. mojavensis
Node of Origin (family) D. mojavensis
Genome context
(Dmoj_caf1)
scaffold_6540: 6630127-6630196 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAUAACUCAGCCCUUCACGAUUGGGCUGCGAGUUAUUCUUGCUGUUGUCUCAUCUUAGAUAUCGUUCUGCUUGAAGGAUGAGAUCAGUCAGAAUAACUCGCAGCUCAAUUGAUAAGCAACAAGAUUUUUU
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Structure
        10          20        30        40        50        60     
AAUAACUCAGCCCUUCA--|                     U    UU        UUAGAUAUCG 
                   CGAUUGGGCUGCGAGUUAUUCU GCUG  GUCUCAUC          U
                   GUUAACUCGACGCUCAAUAAGA UGAC  UAGAGUAG          U
UUUUUUAGAACAACGAAUA^                     C    --        GAAGUUCGUC 
.       120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Em Fe Ma Ma
Star sequence

Dmo-Mir-9538_5p*

mirBase accessionNone
Sequence
0- AGUUAUUCUUGCUGUUGUCUCAUC -24
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Mature sequence

Dmo-Mir-9538_3p

mirBase accessionNone
Sequence
48- UGAGAUCAGUCAGAAUAACUCG -70
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