| MirGeneDB ID | Cpo-Mir-197 |
|---|
| Family name |
MIR-197 (all species) |
|---|
| Species |
Guinea pig (Cavia porcellus) |
|---|
| MiRBase ID |
cpo-mir-197
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-197
Cfa-Mir-197
Cja-Mir-197
Dno-Mir-197
Eca-Mir-197
Hsa-Mir-197
Laf-Mir-197
Mml-Mir-197
Mmr-Mir-197
Ocu-Mir-197
Pab-Mir-197
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(cavPor3) |
scaffold_2: 33750403-33750463 [+]
UCSC
|
|---|
| Seed |
UCACCAC |
|---|
Precursor
(pre-Mir +30nt flank) |
CUGCUGGAAUCUGUGCUCCGGGGGCUGUGCCGGGUAGAGAGGGCAGUGGGAGGUAAGAGCUCUUCACCCUUCACCACCUUCUCCACCCAGCAUGGCCAGCACACUUUGGUCUACGGCAUAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUGCUGGAAUCUGUGCUCCGGG--| C A CA GA UAAGAG
GGCUGUGC GGGU GAGAGGG GUGG GG \
CCGGUACG CCCA CUCUUCC CACU CC C
UAUACGGCAUCUGGUUUCACACGA^ A C AC UC ACUUCU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
|
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| Star sequence |
Cpo-Mir-197_5p* |
| mirBase accession | MIMAT0047084 |
|---|
| Sequence |
0- CGGGUAGAGAGGGCAGUGGGAGG -23
Get sequence
|
|---|
| Mature sequence |
Cpo-Mir-197_3p |
| mirBase accession | MIMAT0047085 |
|---|
| Sequence |
39- UUCACCACCUUCUCCACCCAGC -61
Get sequence
|
|---|
