| MirGeneDB ID | Cpi-Novel-1 |
|---|
| Family name |
CPI-NOVEL-1 (all species) |
|---|
| Species |
Western painted turtle (Chrysemys picta bellii) |
|---|
| MiRBase ID |
cpi-mir-1729
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. picta
|
|---|
| Node of Origin (family) |
C. picta
|
|---|
Genome context
(chrPic1) |
JH584702: 3225755-3225811 [-]
UCSC
Ensembl
|
|---|
| Seed |
AGCCCUU |
|---|
Precursor
(pre-Mir +30nt flank) |
AGUAUUUUCCUCUUUCUGGAGCUGAUCCUGAAGCCCUUACUCACAUGAGCAGUCCCACAUAAGUCCUCAAGGUGAGUAAGGGCUGCGAGAUUGGACCCUAAAUACCACUGUUGCGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGUAUUUUCCUCUUUCU-- AG UG C A A-| CAGUCCC
GG C AUC UG AGCCCUUACUCAC UGAG A
CC G UAG GC UCGGGAAUGAGUG ACUC C
AGGCGUUGUCACCAUAAAU CA GU A G GA^ CUGAAUA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Although named mir-1729 by miRBase this gene not only differs from the avian mir-1729 sequence in the seed sequence it is also not synentic with the avian mir-1729 and is thus given a different identifer here. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Cpi-Novel-1_5p |
| mirBase accession | MIMAT0037954 |
|---|
| Sequence |
0- AAGCCCUUACUCACAUGAGCA -21
Get sequence
|
|---|
| Star sequence |
Cpi-Novel-1_3p* |
| mirBase accession | MIMAT0037955 |
|---|
| Sequence |
35- CUCAAGGUGAGUAAGGGCUGCG -57
Get sequence
|
|---|
