MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-9597

Family name MIR-9597 (all species)
Seed AAAUAUC
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-9597
Paralogues
Orthologues
Node of Origin (locus) C. picta
Node of Origin (family) C. picta
Genome context
(chrPic1)
JH584680: 5293575-5293634 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCUGUAAUGGAUGUCAGGCACUUGGGCCCAGAUCCUAAGACGUAUUUAGAUGCUUAACAUUAGAUACCUAAAUAUCUUUCAGGAUCUGGGCCCUGAUGAAUAUUCCAACAGUAUACCAG
Get precursor sequence
Structure
        10          20        30        40        50         
CCCUGUAAUGGAUGUCAGG--| CUU             A   C        AUGCUUAA 
                     CA   GGGCCCAGAUCCU AGA GUAUUUAG        C
                     GU   CCCGGGUCUAGGA UUU UAUAAAUC        A
GACCAUAUGACAACCUUAUAA^ AGU             C   C        CAUAGAUU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Te Te Te To
Star sequence

Cpi-Mir-9597_5p*

mirBase accessionMIMAT0037990
Sequence
0- AGAUCCUAAGACGUAUUUAG -20
Get sequence
Mature sequence

Cpi-Mir-9597_3p

mirBase accessionMIMAT0037991
Sequence
39- UAAAUAUCUUUCAGGAUCUGG -60
Get sequence