MirGeneDB ID | Cpi-Mir-9597 |
Family name |
MIR-9597 (all species) |
Seed |
AAAUAUC |
Species |
Western painted turtle (Chrysemys picta bellii) |
MiRBase ID |
cpi-mir-9597
|
Paralogues |
|
Orthologues |
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Node of Origin (locus) |
C. picta
|
Node of Origin (family) |
C. picta
|
Genome context (chrPic1) |
JH584680: 5293575-5293634 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCCUGUAAUGGAUGUCAGGCACUUGGGCCCAGAUCCUAAGACGUAUUUAGAUGCUUAACAUUAGAUACCUAAAUAUCUUUCAGGAUCUGGGCCCUGAUGAAUAUUCCAACAGUAUACCAG
Get precursor sequence
|
Structure | 10 20 30 40 50
CCCUGUAAUGGAUGUCAGG--| CUU A C AUGCUUAA
CA GGGCCCAGAUCCU AGA GUAUUUAG C
GU CCCGGGUCUAGGA UUU UAUAAAUC A
GACCAUAUGACAACCUUAUAA^ AGU C C CAUAGAUU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Cpi-Mir-9597_5p* |
mirBase accession | MIMAT0037990 |
Sequence |
0- AGAUCCUAAGACGUAUUUAG -20
Get sequence
|
Mature sequence |
Cpi-Mir-9597_3p |
mirBase accession | MIMAT0037991 |
Sequence |
39- UAAAUAUCUUUCAGGAUCUGG -60
Get sequence
|