| MirGeneDB ID | Cpi-Mir-9593 |
|---|
| Family name |
MIR-9593 (all species) |
|---|
| Species |
Western painted turtle (Chrysemys picta bellii) |
|---|
| MiRBase ID |
cpi-mir-9593
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. picta
|
|---|
| Node of Origin (family) |
C. picta
|
|---|
Genome context
(chrPic1) |
JH584667: 1013393-1013452 [+]
UCSC
Ensembl
|
|---|
| Seed |
GGUGUAA |
|---|
Precursor
(pre-Mir +30nt flank) |
AACGGACCAAACGUCUGGCCUCGGUUACGCUGGUGUAAAUCUGGAGUGGAUCCCCUGACUUCAGUGGCGUCACUCCGCAUUUACAUUGCUGUGACUGAGAGCACAACCCCCACCAAAGUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AACGGACCAAACGUCUG- - -| U C AU CCUGA
GC CUCGGUUAC GC GGUGUAAAU UGGAGUGG CC C
CG GAGUCAGUG CG UUACAUUUA GCCUCACU GG U
CUGAAACCACCCCCAACA A U^ - C GC UGACU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Cpi-Mir-9593_5p |
| mirBase accession | MIMAT0037982 |
|---|
| Sequence |
0- UGGUGUAAAUCUGGAGUGGAUCC -23
Get sequence
|
|---|
| Co-mature sequence |
Cpi-Mir-9593_3p |
| mirBase accession | MIMAT0037983 |
|---|
| Sequence |
37- CGUCACUCCGCAUUUACAUUGCU -60
Get sequence
|
|---|
