MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-9589

Family name MIR-9589 (all species)
Seed CAGGUGG
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-9589
Paralogues
Orthologues
Node of Origin (locus) C. picta
Node of Origin (family) C. picta
Genome context
(chrPic1)
JH584690: 4792149-4792205 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAGCCAGAAAGAUUCUGCAGGCCAGAUUCUGCCCUCAUUUAUACUUGUGUCUUCAAUGGGUUUACACAGGUGGAACCGAGGGCAGAAUUUAGCCCUGCAAUUGCACCUUAAUUCAC
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Structure
        10         20         30        40        50        
CCAGCCAGAAAGAUUCU-   -|  C             AUUUA         CUUCAA 
                  GCA GGC AGAUUCUGCCCUC     UACUUGUGU      \
                  CGU CCG UUUAAGACGGGAG     GUGGACACA      U
CACUUAAUUCCACGUUAA   C^  A             CCAAG         UUUGGG 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Te Te Te To
Star sequence

Cpi-Mir-9589_5p*

mirBase accessionMIMAT0037974
Sequence
0- UGCCCUCAUUUAUACUUGUGU -21
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Mature sequence

Cpi-Mir-9589_3p

mirBase accessionMIMAT0037975
Sequence
36- ACAGGUGGAACCGAGGGCAGA -57
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