MirGeneDB ID | Cpi-Mir-9589 |
Family name |
MIR-9589 (all species) |
Seed |
CAGGUGG |
Species |
Western painted turtle (Chrysemys picta bellii) |
MiRBase ID |
cpi-mir-9589
|
Paralogues |
|
Orthologues |
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Node of Origin (locus) |
C. picta
|
Node of Origin (family) |
C. picta
|
Genome context (chrPic1) |
JH584690: 4792149-4792205 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCAGCCAGAAAGAUUCUGCAGGCCAGAUUCUGCCCUCAUUUAUACUUGUGUCUUCAAUGGGUUUACACAGGUGGAACCGAGGGCAGAAUUUAGCCCUGCAAUUGCACCUUAAUUCAC
Get precursor sequence
|
Structure | 10 20 30 40 50
CCAGCCAGAAAGAUUCU- -| C AUUUA CUUCAA
GCA GGC AGAUUCUGCCCUC UACUUGUGU \
CGU CCG UUUAAGACGGGAG GUGGACACA U
CACUUAAUUCCACGUUAA C^ A CCAAG UUUGGG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Cpi-Mir-9589_5p* |
mirBase accession | MIMAT0037974 |
Sequence |
0- UGCCCUCAUUUAUACUUGUGU -21
Get sequence
|
Mature sequence |
Cpi-Mir-9589_3p |
mirBase accession | MIMAT0037975 |
Sequence |
36- ACAGGUGGAACCGAGGGCAGA -57
Get sequence
|