| MirGeneDB ID | Cpi-Mir-9589 |
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| Family name |
MIR-9589 (all species) |
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| Species |
Western painted turtle (Chrysemys picta bellii) |
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| MiRBase ID |
cpi-mir-9589
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. picta
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| Node of Origin (family) |
C. picta
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Genome context
(chrPic1) |
JH584690: 4792149-4792205 [+]
UCSC
Ensembl
|
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| Seed |
CAGGUGG |
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Precursor
(pre-Mir +30nt flank) |
CCAGCCAGAAAGAUUCUGCAGGCCAGAUUCUGCCCUCAUUUAUACUUGUGUCUUCAAUGGGUUUACACAGGUGGAACCGAGGGCAGAAUUUAGCCCUGCAAUUGCACCUUAAUUCAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CCAGCCAGAAAGAUUCU- -| C AUUUA CUUCAA
GCA GGC AGAUUCUGCCCUC UACUUGUGU \
CGU CCG UUUAAGACGGGAG GUGGACACA U
CACUUAAUUCCACGUUAA C^ A CCAAG UUUGGG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Cpi-Mir-9589_5p* |
| mirBase accession | MIMAT0037974 |
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| Sequence |
0- UGCCCUCAUUUAUACUUGUGU -21
Get sequence
|
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| Mature sequence |
Cpi-Mir-9589_3p |
| mirBase accession | MIMAT0037975 |
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| Sequence |
36- ACAGGUGGAACCGAGGGCAGA -57
Get sequence
|
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