MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-9587

Family name MIR-9587 (all species)
Seed AGCAAAG
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-9587
Paralogues
Orthologues
Node of Origin (locus) C. picta
Node of Origin (family) C. picta
Genome context
(chrPic1)
JH584446: 954091-954147 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGAAGCGUGUGCAUCCGGCCAUCCCUCUUCAGCAAAGCACCGAAGCACACGCAUCACCUAAAGCGCAUGCGUCGGUGCUGCUCAGAAGAGUGGCGGACUGCUGCUCCAGACCUGGC
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Structure
        10            20        30          40        50        
GCGAAGCGUGUGCAUCCG----|   UCC      --    AA       A   CA  CAUCA 
                      GCCA   CUCUUC  AGCA  GCACCGA GCA  CG     C
                      CGGU   GAGAAG  UCGU  CGUGGCU CGU  GC     C
CGGUCCAGACCUCGUCGUCAGG^   ---      AC    --       G   AC  GAAAU 
     110       100           90        80          70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-9587_5p

mirBase accessionMIMAT0037970
Sequence
0- CAGCAAAGCACCGAAGCACACG -22
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Co-mature sequence

Cpi-Mir-9587_3p

mirBase accessionMIMAT0037971
Sequence
35- GCAUGCGUCGGUGCUGCUCAGA -57
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