MirGeneDB ID | Cpi-Mir-9587 |
Family name |
MIR-9587 (all species) |
Species |
Western painted turtle (Chrysemys picta bellii) |
MiRBase ID |
cpi-mir-9587
|
Paralogues |
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Orthologues |
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Node of Origin (locus) |
C. picta
|
Node of Origin (family) |
C. picta
|
Genome context (chrPic1) |
JH584446: 954091-954147 [+]
UCSC
Ensembl
|
Seed |
AGCAAAG |
Precursor (pre-Mir +30nt flank) |
GCGAAGCGUGUGCAUCCGGCCAUCCCUCUUCAGCAAAGCACCGAAGCACACGCAUCACCUAAAGCGCAUGCGUCGGUGCUGCUCAGAAGAGUGGCGGACUGCUGCUCCAGACCUGGC
Get precursor sequence
|
Structure | 10 20 30 40 50
GCGAAGCGUGUGCAUCCG----| UCC -- AA A CA CAUCA
GCCA CUCUUC AGCA GCACCGA GCA CG C
CGGU GAGAAG UCGU CGUGGCU CGU GC C
CGGUCCAGACCUCGUCGUCAGG^ --- AC -- G AC GAAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cpi-Mir-9587_5p |
mirBase accession | MIMAT0037970 |
Sequence |
0- CAGCAAAGCACCGAAGCACACG -22
Get sequence
|
Co-mature sequence |
Cpi-Mir-9587_3p |
mirBase accession | MIMAT0037971 |
Sequence |
35- GCAUGCGUCGGUGCUGCUCAGA -57
Get sequence
|