MirGeneDB 3.0

MirGeneDB ID

Cpi-Mir-9580

Family name MIR-9580 (all species)
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-9580
Paralogues
Orthologues
Node of Origin (locus) C. picta
Node of Origin (family) C. picta
Genome context
(chrPic1)
JH584581: 6053420-6053478 [+] UCSC Ensembl
Seed AUGGGGA
Precursor
(pre-Mir +30nt flank)
UAACUCUGAAGUCUGUGGGUAUGCAUACGCUAUGGGGACAAUACUGGCAUAGCUUUAGCACCCUAGCUAUGCCGGCAUAGCCCCAUGGUGUGUAGACUCACCAACAGCAAUGGAAGGGG
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Structure
        10            20        30        40        50         
UAACUCUGAAGUCUGUG----|  AUGC             ACA  A          UUUAG 
                     GGU    AUACGCUAUGGGG   AU CUGGCAUAGC     C
                     UCA    UGUGUGGUACCCC   UA GGCCGUAUCG     A
GGGGAAGGUAACGACAACCAC^  GA--             GA-  C          AUCCC 
       110       100          90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Te Te Te To
Mature sequence

Cpi-Mir-9580_5p

mirBase accessionMIMAT0037956
Sequence
0- UAUGGGGACAAUACUGGCAUAGC -23
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Star sequence

Cpi-Mir-9580_3p*

mirBase accessionMIMAT0037957
Sequence
37- UAUGCCGGCAUAGCCCCAUGGU -59
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