| MirGeneDB ID | Cpi-Mir-9579 |
|---|
| Family name |
MIR-9579 (all species) |
|---|
| Seed |
UCUCUUU |
|---|
| Species |
Western painted turtle (Chrysemys picta bellii) |
|---|
| MiRBase ID |
cpi-mir-9579
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. picta
|
|---|
| Node of Origin (family) |
C. picta
|
|---|
Genome context
(chrPic1) |
JH584890: 647206-647262 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGUGCUGUACCACCUGUGGUAGUGAUGGUGAAAGUGCUAGCGUAGAAACGGCAGAUGCUUUUCAUGCUCUCUUUGCUAGCGCUUCCACCAAGGUUACCACUGACGACGCAGAUGCAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGUGCUGUACCACCUGU--| GA A U AAC GAUGC
GGUAGU UGGUG AAGUGCUAGCG AGA GGCA \
CCAUUG ACCAC UUCGCGAUCGU UCU UCGU U
CACGUAGACGCAGCAGUCA^ GA C U C-- ACUUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Cpi-Mir-9579_5p* |
| mirBase accession | MIMAT0037952 |
|---|
| Sequence |
0- AAAGUGCUAGCGUAGAAACGGCA -23
Get sequence
|
|---|
| Mature sequence |
Cpi-Mir-9579_3p |
| mirBase accession | MIMAT0037953 |
|---|
| Sequence |
36- CUCUCUUUGCUAGCGCUUCCA -57
Get sequence
|
|---|
