MirGeneDB 3.0

MirGeneDB ID

Cpi-Mir-9579

Family name MIR-9579 (all species)
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-9579
Paralogues
Orthologues
Node of Origin (locus) C. picta
Node of Origin (family) C. picta
Genome context
(chrPic1)
JH584890: 647206-647262 [+] UCSC Ensembl
Seed UCUCUUU
Precursor
(pre-Mir +30nt flank)
GGUGCUGUACCACCUGUGGUAGUGAUGGUGAAAGUGCUAGCGUAGAAACGGCAGAUGCUUUUCAUGCUCUCUUUGCUAGCGCUUCCACCAAGGUUACCACUGACGACGCAGAUGCAC
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Structure
        10          20        30        40        50         
GGUGCUGUACCACCUGU--|     GA     A           U   AAC    GAUGC 
                   GGUAGU  UGGUG AAGUGCUAGCG AGA   GGCA     \
                   CCAUUG  ACCAC UUCGCGAUCGU UCU   UCGU     U
CACGUAGACGCAGCAGUCA^     GA     C           U   C--    ACUUU 
     110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Te Te Te To
Star sequence

Cpi-Mir-9579_5p*

mirBase accessionMIMAT0037952
Sequence
0- AAAGUGCUAGCGUAGAAACGGCA -23
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Mature sequence

Cpi-Mir-9579_3p

mirBase accessionMIMAT0037953
Sequence
36- CUCUCUUUGCUAGCGCUUCCA -57
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