| MirGeneDB ID | Cpi-Mir-9578 |
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| Family name |
MIR-9578 (all species) |
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| Species |
Western painted turtle (Chrysemys picta bellii) |
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| MiRBase ID |
cpi-mir-9578
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. picta
|
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| Node of Origin (family) |
C. picta
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Genome context
(chrPic1) |
JH584745: 132134-132194 [+]
UCSC
Ensembl
|
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| Seed |
GGGACAC |
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Precursor
(pre-Mir +30nt flank) |
AACUUCUCUACCUCUUGUUCUGUCCUGUUUUGGGACACAAGCAGAGCAUCUGCAUGACCUUCUCUACCUCAUGCUCUGCCUGUGUCCCAAAAUAGGCAGAACAUCUGCAUGACAGUAGAGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AACUUCUCUACCUCUUG---| U A CUGCAUGACC
UUCUG CCUGUUUUGGGACACA GCAGAGCAU \
AAGAC GGAUAAAACCCUGUGU CGUCUCGUA U
GGAGAUGACAGUACGUCUAC^ - C CUCCAUCUCU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Cpi-Mir-9578_5p |
| mirBase accession | MIMAT0037950 |
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| Sequence |
0- UGGGACACAAGCAGAGCAUCUG -22
Get sequence
|
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| Star sequence |
Cpi-Mir-9578_3p* |
| mirBase accession | MIMAT0037951 |
|---|
| Sequence |
39- CAUGCUCUGCCUGUGUCCCAAA -61
Get sequence
|
|---|
