| MirGeneDB ID | Cja-Mir-6529 |
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| Family name |
MIR-6529 (all species) |
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| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-6529
Cfa-Mir-6529
Cpo-Mir-6529
Dno-Mir-6529
Eca-Mir-6529
Ete-Mir-6529
Hsa-Mir-6529
Laf-Mir-6529
Mml-Mir-6529
Mmr-Mir-6529
Ocu-Mir-6529
Pab-Mir-6529
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021929.1: 76756576-76756636 [+]
UCSC
Ensembl
|
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| Seed |
AGAGAUC |
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Precursor
(pre-Mir +30nt flank) |
AACAUCUUAGAUGAGAAAACCUGUUCUCUUGAGAGAUCAGAGGCGCAGAGUGCGUCAAUGUCAAUGAAGCCUGUGCCUUUUACCUCUUUAAGAGCGCACGGUUUCAUUCUGCUUCUAAAUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AACAUCUUAGAUGAGAA- - U -| AUC A GCGUCAAU
AACC UGU CUCUU GAGAG AGAGGCGCAG GU \
UUGG ACG GAGAA UUCUC UUUCCGUGUC CG G
CUAAAUCUUCGUCUUACU C C U^ CAU - AAGUAACU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Cja-Mir-6529_5p |
| mirBase accession | None |
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| Sequence |
0- GAGAGAUCAGAGGCGCAGAGU -21
Get sequence
|
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| Star sequence |
Cja-Mir-6529_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- CCUGUGCCUUUUACCUCUUUAA -61
Get sequence
|
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