| MirGeneDB ID | Cja-Mir-589 |
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| Family name |
MIR-589 (all species) |
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| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Hsa-Mir-589
Mml-Mir-589
Pab-Mir-589
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| Node of Origin (locus) |
Primates
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| Node of Origin (family) |
Primates
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Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021916.1: 15117650-15117710 [+]
UCSC
Ensembl
|
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| Seed |
GAGAACC |
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Precursor
(pre-Mir +30nt flank) |
CACAAACUCAAGCCUGUGCCCAGCAGCCGCUGAGAACCACGUCUGCUCUGAGCCGGGUACUGCCUGUUCAGAACAAACACCGCUUCCCAGACGCUGCCAGCUGGCCCCGUUCCUCUGGAUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CACAAACUCAAGCCUGU---| CCA CG A CCAC- C C CGGGU
GC GCAGC CUG GAA GU UG UCUGAGC A
CG CGUCG GAC CUU CA AC AGACUUG C
UUAGGUCUCCUUGCCCCGGU^ AC- CA C CGCCA A A UCCGU
. 110 100 90 80 70 60 |
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| Deep sequencing |
|
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| Comment | Although absent in M. murinus this locus is present in other lemurs. |
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
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| Mature sequence |
Cja-Mir-589_5p (predicted) |
| mirBase accession | None |
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| Sequence |
0- UGAGAACCACGUCUGCUCUGAGC -23
Get sequence
|
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| Star sequence |
Cja-Mir-589_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
37- UCAGAACAAACACCGCUUCCCAGA -61
Get sequence
|
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