| MirGeneDB ID | Cja-Mir-579 |
|---|
| Family name |
MIR-579 (all species) |
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| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Hsa-Mir-579
Mml-Mir-579
Pab-Mir-579
|
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| Node of Origin (locus) |
Simiiformes
|
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| Node of Origin (family) |
Simiiformes
|
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Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021916.1: 169635670-169635726 [+]
UCSC
Ensembl
|
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| Seed |
UCAUUUG |
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Precursor
(pre-Mir +30nt flank) |
UGGAAUCAUAUUAGAUUGAUGCAAAAGUAAUCACGGUUUGUGCCAAAUGGCGAUUUGAAUUGAAUUCAUUUGGCACAAAUCACGAUUACUUUUGCAUCAACCUAAUAUAGUAUAUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGAAUCAUAUUAGAUU--| AC CGAUUUG
GAUGCAAAAGUAAUC GGUUUGUGCCAAAUGG \
CUACGUUUUCAUUAG CUAAACACGGUUUACU A
UGUAUAUGAUAUAAUCCAA^ CA UAAGUUA
110 100 90 80 70 60 |
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| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Star sequence |
Cja-Mir-579_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- UCACGGUUUGUGCCAAAUGGCGA -23
Get sequence
|
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| Mature sequence |
Cja-Mir-579_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
34- UUCAUUUGGCACAAAUCACGAUU -57
Get sequence
|
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