MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4065

Family name MIR-4065 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4065
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 1: 4176956-4177027 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4065)		 Mir-4047 1: 4157238-4157294 [-] UCSC Ensembl
Mir-4065 1: 4176956-4177027 [-] UCSC Ensembl
Seed AUCGACA
Precursor
(pre-Mir +30nt flank)		 
AUAAAAUAUUAAACGAGGCGUCCCAAUAUGCACUGUGGAUCUUGUCCUAUACUUGUCGGGCGCAGCUACAAUUAAUCAGUAUCGACAAGAUCUCUCAGUGGGUAUGGACUGCUUACACUCAGCAGUAUCAGC
Get precursor sequence
Structure
        10            20        30         40        50        60     
AUAAAAUAUUAAACGAG---  -|   CA    G     U-          CU     UGUCGGGCGCA 
                    GC GUCC  AUAU CACUG  GGAUCUUGUC  AUACU           G
                    CG CAGG  UAUG GUGAC  UCUAGAACAG  UAUGA           C
CGACUAUGACGACUCACAUU  U^   --    G     UC          C-     CUAAUUAACAU 
130       120       110         100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-4065_5p*
mirBase accessionMIMAT0016618
Sequence 
0- CACUGUGGAUCUUGUCCUAUACU -23
Get sequence
Mature sequence

Cin-Mir-4065_3p
mirBase accessionMIMAT0016619
Sequence 
49- UAUCGACAAGAUCUCUCAGUGGG -72
Get sequence