MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4063

Family name MIR-4063 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4063
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 13: 1256492-1256550 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4063)		 Mir-4063 13: 1256492-1256550 [-] UCSC Ensembl
Mir-4048 13: 1257512-1257570 [-] UCSC Ensembl
Seed ACACCUU
Precursor
(pre-Mir +30nt flank)		 
AAGUUAAGGAGAAAAUUGCUUUGUUUGUUUAACACCUUAAUCACCAAUGUGAUUGUGAUAACAGCAAACGCAUUGGAUUAAGGUGGACAAUAAACCAAGCAUUAUCAACUCUCCUUUAU
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Structure
        10          20        30        40        50          
AAGUUAAGGAGAAAAUU--|   U       UAA         CA        A    GAU 
                   GCUU GUUUGUU   CACCUUAAU  CCAAUGUG UUGU   \
                   CGAA CAAAUAA   GUGGAAUUA  GGUUACGC AACG   A
UAUUUCCUCUCAACUAUUA^   C       CAG         --        A    ACA 
       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4063_5p
mirBase accessionMIMAT0016614
Sequence 
0- AACACCUUAAUCACCAAUGUGAUUGU -26
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Star sequence

Cin-Mir-4063_3p*
mirBase accessionMIMAT0016615
Sequence 
36- AACGCAUUGGAUUAAGGUGGACA -59
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