MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4062-P1

Family name MIR-4062 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4068
Paralogues Cin-Mir-4062-P2 
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 5: 996178-996244 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4062-P1)		 Mir-4062-P1 5: 996178-996244 [+] UCSC Ensembl
Mir-4062-P2 5: 996382-996447 [+] UCSC Ensembl
Seed AUGCUGA
Precursor
(pre-Mir +30nt flank)		 
UAUAGAAUCCUUCUGCUCGUUUUACGCGAAAAGUCUUUGCCCAACAGCAACAUGUAUCUCACCAUUGCUUCAUGUAUGCUGAUGAACAAAGGCUUGCCGCUACCGGGCGCUAUCACCAGUCUAACUC
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Structure
        10         20         30        40         50        60  
UAUAGAAUCCUUCUGCU-     UAC-   AA         CC  A     -|  UGUAUCUCA 
                  CGUUU    GCG  AAGUCUUUG  CA CAGCA ACA         C
                  GCGGG    CGC  UUCGGAAAC  GU GUCGU UGU         C
CUCAAUCUGACCACUAUC     CCAU   CG         AA  A     A^  ACUUCGUUA 
     120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-4062-P1_5p*
mirBase accessionMIMAT0016624
Sequence 
0- AAGUCUUUGCCCAACAGCAACA -22
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Mature sequence

Cin-Mir-4062-P1_3p
mirBase accessionMIMAT0016625
Sequence 
44- UAUGCUGAUGAACAAAGGCUUGC -67
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