MirGeneDB 2.1

MirGeneDB ID

Cin-Mir-4057

Family name MIR-4057 (all species)
Seed UUGCUAC
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4057
Paralogues
Orthologues Bfl-Mir-4057  Bla-Mir-4057 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(ci3)
8: 5547196-5547250 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGUAGCGGGACCAACGUAUCACAGCGAAGGCUUGGCGACUGUAGCAUAACACGGAUAGUGUUUGCUACUUUCACCAAGAUCAGCGCUGUCUUGUCAAAGCAACCCUGCUAUUU
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Structure
        10        20          30         40        50       
CUUGUAGCGGGACCAACGUAUC--      AA  -|    C  CU      U    CGG 
                        ACAGCG  GG CUUGG GA  GUAGCA AACA   \
                        UGUCGC  CU GAACC CU  CAUCGU UUGU   A
UUUAUCGUCCCAACGAAACUGUUC      GA  A^    A  UU      -    GAU 
   110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Star sequence

Cin-Mir-4057_5p*

mirBase accessionMIMAT0016603
Sequence
0- GGCUUGGCGACUGUAGCAUAACA -23
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Mature sequence

Cin-Mir-4057_3p

mirBase accessionMIMAT0016604
Sequence
32- UUUGCUACUUUCACCAAGAUCAG -55
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