MirGeneDB 2.1

MirGeneDB ID

Bla-Mir-4057

Family name MIR-4057 (all species)
Seed UUGCUAC
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues
Orthologues Bfl-Mir-4057  Cin-Mir-4057 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(BraLan2)
Sc0000279: 312688-312746 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGCCCCCUCCCACCCGUGCUGUGGGUGCCCAUCUUGGUGGUGUAGCAGCUGUGAGAUGUGAGCCACAUUUGCUACGGCCACCAAGAUCUGUGCCAGCAGUGUUCCUCUUCUUUCUUCCU
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Structure
        10          20        30        40         50        
GGCCCCCUCCCACCCGU--     G  UG CC          -|       C  UGAGAU 
                   GCUGU GG  C  AUCUUGGUGG UGUAGCAG UG      G
                   UGACG CC  G  UAGAACCACC GCAUCGUU AC      U
UCCUUCUUUCUUCUCCUUG     A  GU UC          G^       U  ACCGAG 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Bla-Mir-4057_5p*

mirBase accessionNone
Sequence
0- AUCUUGGUGGUGUAGCAGCUG -21
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Mature sequence

Bla-Mir-4057_3p

mirBase accessionNone
Sequence
37- UUUGCUACGGCCACCAAGAUCU -59
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