MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4055

Family name MIR-4055 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4055
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 7: 633871-633928 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4055)		 Mir-4055 7: 633871-633928 [-] UCSC Ensembl
Mir-4079 7: 634173-634224 [-] UCSC Ensembl
Seed AUUCGGA
Precursor
(pre-Mir +30nt flank)		 
AUUAACGUAUAAGUUCUACAAGCGCCUGCGUAUUCGGAAAUGUAGGGUGGACGUUAUCAUAAUUCGACCAUUCUGUGUUUCGAAUGCGUAAGUGCUGUGUACUCACGUCUGUCUCCAG
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Structure
        10         20         30        40        50         
AUUAACGUAUAAGUUCU-   -|    C          G   UG        A  UUAUC 
                  ACA AGCGC UGCGUAUUCG AAA  UAGGGUGG CG     \
                  UGU UCGUG AUGCGUAAGC UUU  GUCUUACC GC     A
GACCUCUGUCUGCACUCA   G^    A          -   GU        A  UUAAU 
      110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4055_5p
mirBase accessionMIMAT0016599
Sequence 
0- UAUUCGGAAAUGUAGGGUGGACG -23
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Star sequence

Cin-Mir-4055_3p*
mirBase accessionMIMAT0016600
Sequence 
36- ACCAUUCUGUGUUUCGAAUGCG -58
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