| MirGeneDB ID | Cin-Mir-4043 |
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| Family name |
MIR-4043 (all species) |
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| Seed |
UGCAUAG |
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| Species |
Sea Squirt (Ciona intestinalis) |
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| MiRBase ID |
cin-mir-4043
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. intestinalis
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| Node of Origin (family) |
C. intestinalis
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Genome context
(ci3) |
14: 1118678-1118734 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGAGUUUUGCGUACAUUUUUCGGCGGUUGUCGUUCAGUCAUUCUAUGCAUACGUGCUAUACCGGUUUGCAUAGAUUGUCCGAACAUUAACAGCCGAAGGCCAUCUUCAAACGCAAGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGAGUUUUGCGUACAUU--| G UC AGU U U GUGCU
UUUCGGC GUUG GUUC CA UCUAUGCA AC \
GAAGCCG CAAU CAAG GU AGAUACGU UG A
AGAACGCAAACUUCUACCG^ A UA CCU U U GCCAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Ga |
La |
La |
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| Star sequence |
Cin-Mir-4043_5p* |
| mirBase accession | MIMAT0016575 |
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| Sequence |
0- CGUUCAGUCAUUCUAUGCAUAC -22
Get sequence
|
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| Mature sequence |
Cin-Mir-4043_3p |
| mirBase accession | MIMAT0016576 |
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| Sequence |
35- UUGCAUAGAUUGUCCGAACAUU -57
Get sequence
|
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