MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4015-P1

Family name MIR-4015 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4015-2
Paralogues Cin-Mir-4015-P2 
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 HT000065.1: 63426-63477 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4015-P1)		 Mir-4015-P1 HT000065.1: 63426-63477 [+] UCSC Ensembl
Mir-4015-P2 HT000065.1: 63426-63477 [+] UCSC Ensembl
Seed GAUAGGU
Precursor
(pre-Mir +30nt flank)		 
UUUUGAUCUCAUAUUUUGGUCUGUUACGUCACAAUGAAAUUAACCUUCUCUGUGACGUCAGGAUAGGUUGAAUUCAUCGUGGUGUAGCUGACUUCUAUCUACGAGACGAAAU
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Structure
        10          20        30        40        50     
UUUUGAUCUCAUAUUUU--|   U     GU   A     A       UC   GUG 
                   GGUC GUUAC  CAC AUGAA UUAACCU  UCU   A
                   UCAG CGAUG  GUG UACUU AGUUGGA  GGA   C
UAAAGCAGAGCAUCUAUCU^   U     UG   C     A       UA   CUG 
110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-4015-P1_5p*
mirBase accessionMIMAT0016520
Sequence 
0- ACAAUGAAAUUAACCUUCUCU -21
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Mature sequence

Cin-Mir-4015-P1_3p
mirBase accessionMIMAT0016521
Sequence 
30- GGAUAGGUUGAAUUCAUCGUGG -52
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