MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4014-P1

Family name MIR-4014 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4014-2
Paralogues Cin-Mir-4014-P2 
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 12: 3135494-3135548 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4014-P1)		 Mir-4014-P1 12: 3135494-3135548 [+] UCSC Ensembl
Mir-4014-P2 12: 3135786-3135842 [+] UCSC Ensembl
Seed UACAGAA
Precursor
(pre-Mir +30nt flank)		 
AAUAGGGCCAAAAUUAUGUAACUGCCUUCAGCACCACGAGCUUUUUGGAAUGUUAACGUUCAUUACAGAAAGCGUGUGUGUGCUAAAGUUAGUGAUCGCAACUUCAAUUCAUAAU
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Structure
        10        20          30         40        50      
AAUAGGGCCAAAAUUAUGUA--    C   C     -|   A        G    UUA 
                      ACUG CUU AGCAC CACG GCUUUUUG AAUG   A
                      UGAU GAA UCGUG GUGU CGAAAGAC UUAC   C
UAAUACUUAACUUCAACGCUAG    U   A     U^   G        A    UUG 
   110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-4014-P1_5p*
mirBase accessionMIMAT0016976
Sequence 
0- GCACCACGAGCUUUUUGGAAUG -22
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Mature sequence

Cin-Mir-4014-P1_3p
mirBase accessionMIMAT0016519
Sequence 
32- UUACAGAAAGCGUGUGUGUGCUA -55
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