MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-3598

Family name MIR-3598 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-3598
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 14: 3281620-3281678 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-3598)		 Mir-3598 14: 3281620-3281678 [-] UCSC Ensembl
Mir-4034 14: 3281763-3281819 [-] UCSC Ensembl
Seed CACAGUG
Precursor
(pre-Mir +30nt flank)		 
GAUCAAAGGAACCGCGUAGGUUUUGCUUUAUCACAGUGGUUAUAUACUGCCUGUGGUAUUUACGAACAUGCAGUAUAUCCAUCGUGCCAAUGCGAAACUACCUAUCAUCGUAAAAUCGA
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Structure
        10          20        30        40        50          
GAUCAAAGGAACCGCGUA--|       UUUAU   A    UU         C   GGUAU 
                    GGUUUUGC     CAC GUGG  AUAUACUGC UGU     \
                    UCAAAGCG     GUG UACC  UAUAUGACG ACA     U
AGCUAAAAUGCUACUAUCCA^       UAACC   C    --         U   AGCAU 
       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-3598_5p
mirBase accessionMIMAT0016399
Sequence 
0- UCACAGUGGUUAUAUACUGCCUGU -24
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Star sequence

Cin-Mir-3598_3p*
mirBase accessionMIMAT0016400
Sequence 
37- AUGCAGUAUAUCCAUCGUGCCA -59
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