| MirGeneDB ID | Bla-Novel-1-P1b |
|---|
| Family name |
BRA-NOVEL-1 (all species) |
|---|
| Seed |
GAGCCUC |
|---|
| Species |
European lancelet (Branchiostoma lanceolatum) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Bla-Novel-1-P1a
Bla-Novel-1-P2
Bla-Novel-1-P3
|
|---|
| Orthologues |
Bfl-Novel-1-P1
|
|---|
| Node of Origin (locus) |
B. lanceolatum
|
|---|
| Node of Origin (family) |
Branchiostoma
|
|---|
Genome context
(BraLan2) |
Sc0000011: 5370759-5370817 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCGGGAGUCCCUUUUCUCUGCCUCUGGGCUCAGUGGUCGGUUGAGACUCGCGUGUUUUGUGACAUCACGAGCCUCGACUCACCACUGCUCCCUGCGGUGGGCAGAACGACUGGAUCCAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCGGGAGUCCCUUUUCU--|UG UCU CU C A CGUGUUUU
C CC GGG CAGUGGU GGUUGAG CUCG \
G GG CCC GUCACCA UCAGCUC GAGC G
CACCUAGGUCAGCAAGACG^GU CGU UC C C ACUACAGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Bla-Novel-1-P1b_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAGUGGUCGGUUGAGACUCGCG -22
Get sequence
|
|---|
| Mature sequence |
Bla-Novel-1-P1b_3p |
| mirBase accession | None |
|---|
| Sequence |
37- CGAGCCUCGACUCACCACUGCU -59
Get sequence
|
|---|
