| MirGeneDB ID | Bla-Novel-1-P2 |
|---|
| Family name |
BRA-NOVEL-1 (all species) |
|---|
| Seed |
AGUGGUC |
|---|
| Species |
European lancelet (Branchiostoma lanceolatum) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Bla-Novel-1-P1a
Bla-Novel-1-P1b
Bla-Novel-1-P3
|
|---|
| Orthologues |
Bfl-Novel-1-P2
|
|---|
| Node of Origin (locus) |
Branchiostoma
|
|---|
| Node of Origin (family) |
Branchiostoma
|
|---|
Genome context
(BraLan2) |
Sc0000011: 5371193-5371251 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAAGGCUGUGAUAUAGAGGACCAUACUGACCAGUGGUCCCACCGUGGCUCGUGAACUCUGCAUACCGAGCUUUCGGCUGGACCUCUAGUCAUUGGGUUCUCCUGCGCUACCAAGAUCUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAAGGCUGUGAUAUAGA---| AUAC C U CA U- UGAACU
GGACC UGAC AG GGUCC CCG GGCUCG C
CUUGG ACUG UC CCAGG GGC UCGAGC U
AUCUAGAACCAUCGCGUCCU^ GUU- A U UC UU CAUACG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Bla-Novel-1-P2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CAGUGGUCCCACCGUGGCUCG -21
Get sequence
|
|---|
| Co-mature sequence |
Bla-Novel-1-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
37- AGCUUUCGGCUGGACCUCUAGU -59
Get sequence
|
|---|
