MirGeneDB 3.0

MirGeneDB ID

Bla-Mir-12490

Family name MIR-12490 (all species)
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues
Orthologues Bfl-Mir-12490 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(BraLan2)
Sc0000359: 230266-230327 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-12490)
Mir-12490 Sc0000359: 230266-230327 [-] Ensembl
Mir-4888 Sc0000359: 233080-233139 [-] Ensembl
Seed AAAGGUG
Precursor
(pre-Mir +30nt flank)
GAAGAAAGAGAUCGAAACCUCACGCAGUCAUCUGCUACUGACUCGCUUUAAUGUAACGCCGUUGAAGAGUUAAAGGUGGUCAGUAGUAGGUCACUGUGGGGGUCCGUACCGCCGUCUGAUGU
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Structure
        10           20        30        40        50        60
GAAGAAAGAGAUCGAAA---|   A      C              CG       GUAACGC 
                    CCUC CGCAGU AUCUGCUACUGACU  CUUUAAU       C
                    GGGG GUGUCA UGGAUGAUGACUGG  GAAAUUG       G
UGUAGUCUGCCGCCAUGCCU^   -      C              UG       AGAAGUU 
120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Em Em Em Em
Star sequence

Bla-Mir-12490_5p*

mirBase accessionNone
Sequence
0- UCUGCUACUGACUCGCUUUAAU -22
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Mature sequence

Bla-Mir-12490_3p

mirBase accessionNone
Sequence
40- UAAAGGUGGUCAGUAGUAGGUC -62
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