| MirGeneDB ID | Bko-Mir-12601-P1a |
|---|
| Family name |
MIR-12601 (all species) |
|---|
| Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Bko-Mir-12601-P1b
|
|---|
| Orthologues |
Bpl-Mir-12601
|
|---|
| Node of Origin (locus) |
B. koreanus
|
|---|
| Node of Origin (family) |
Brachionus
|
|---|
Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genomic) |
PJRA01000274.1: 804124-804186 [-]
Ensembl
|
|---|
| Seed |
AGGCCAU |
|---|
Precursor
(pre-Mir +30nt flank) |
AUUCUAGUACUCAAUAGACGCAUAAUAUUUUAGGCCAUCUUAUUAUUUAUGUUAUAAAUAGACGUAAAAUACAUAAACAUAAAAUGGUCUAAAAUAUUACGUUUUCGGUCAUCUAAAUGUUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUUCUAGUACUCAAUAG----| CA C UA UAUAAAUA
ACG UAAUAUUUUAGGCCAU UUAU UUUAUGU G
UGC AUUAUAAAAUCUGGUA AAUA AAAUACA A
CGUUGUAAAUCUACUGGCUUU^ -- A C- UAAAAUGC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | The 3' end of the 5p arm may be monouridylated. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Bko-Mir-12601-P1a_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAGGCCAUCUUAUUAUUUAUGU -22
Get sequence
|
|---|
| Star sequence |
Bko-Mir-12601-P1a_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- AUAAACAUAAAAUGGUCUAAA -63
Get sequence
|
|---|
