MirGeneDB ID | Asu-Novel-2 |
Family name |
ASU-NOVEL-2 (all species) |
Seed |
CUUCGAC |
Species |
Large roundworm (Ascaris suum) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
A. suum
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Node of Origin (family) |
A. suum
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Genome context (ASU_PRJNA80881_plustraces) |
Scaffold122: 2002114-2002167 [+]
|
Precursor (pre-Mir +30nt flank) |
UGCGCAUUCUGGCAGCACCUCGCGAGGUGUUCUUCGACAGUAUGGCCAAAGCUGGAAACAAGCUGCAGCCGGCUGUCGAAAAAUACCUAGGAGGCUUUUUACAAAGCGCUGUAG
Get precursor sequence
|
Structure | 10 20 30 40 50
UGCGCAUUCUGGCAGCA---| GCG C A CAA GGA
CCUC AGGUGUU UUCGACAGU UGGC AGCU \
GGAG UCCAUAA AAGCUGUCG GCCG UCGA A
GAUGUCGCGAAACAUUUUUC^ GA- A - ACG ACA
110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | No |
Tissue expression
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0h |
11 |
12 |
24 |
46 |
64 |
6d |
7d |
8d |
96 |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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Mature sequence |
Asu-Novel-2_5p |
mirBase accession | None |
Sequence |
0- UCUUCGACAGUAUGGCCAAAGCU -23
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|
Star sequence |
Asu-Novel-2_3p* |
mirBase accession | None |
Sequence |
33- UGCAGCCGGCUGUCGAAAAAU -54
Get sequence
|