| MirGeneDB ID | Asu-Novel-1 |
|---|
| Family name |
ASU-NOVEL-1 (all species) |
|---|
| Species |
Large roundworm (Ascaris suum) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
A.suum
|
|---|
| Node of Origin (family) |
A.suum
|
|---|
Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold122: 2002114-2002167 [+]
|
|---|
| Seed |
CUUCGAC |
|---|
Precursor
(pre-Mir +30nt flank) |
UGCGCAUUCUGGCAGCACCUCGCGAGGUGUUCUUCGACAGUAUGGCCAAAGCUGGAAACAAGCUGCAGCCGGCUGUCGAAAAAUACCUAGGAGGCUUUUUACAAAGCGCUGUAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGCGCAUUCUGGCAGCA---| GCG C A CAA GGA
CCUC AGGUGUU UUCGACAGU UGGC AGCU \
GGAG UCCAUAA AAGCUGUCG GCCG UCGA A
GAUGUCGCGAAACAUUUUUC^ GA- A - ACG ACA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Ce |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Asu-Novel-1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCUUCGACAGUAUGGCCAAAGCU -23
Get sequence
|
|---|
| Star sequence |
Asu-Novel-1_3p* |
| mirBase accession | None |
|---|
| Sequence |
33- UGCAGCCGGCUGUCGAAAAAU -54
Get sequence
|
|---|
