MirGeneDB ID | Asu-Mir-5361 |
Family name |
MIR-5361 (all species) |
Seed |
GGGAUAU |
Species |
Large roundworm (Ascaris suum) |
MiRBase ID |
asu-mir-5361
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
A. suum
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Node of Origin (family) |
A. suum
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Genome context (ASU_PRJNA80881_plustraces) |
Scaffold651: 369892-369951 [+]
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Precursor (pre-Mir +30nt flank) |
UUCCUAGAGCGCUAUGCGGGUGCUCGAAUUUGGGAUAUCUUGGAAGGUUUCUCGGUUUUUAUGGGCGGAAAGCUUCCAUUUUGUCCCUGAUUCUAUCGCCACUUAUAAGCGAAUGCCCCG
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCCUAGAGCGCUAUGCG--| CUC U UCU G CGGUUU
GGUG GAAUU GGGAUA UGGAAG UUUCU U
CCGC CUUAG CCCUGU ACCUUC AAAGG U
GCCCCGUAAGCGAAUAUUCA^ UAU U UUU G CGGGUA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | No |
Tissue expression
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0h |
11 |
12 |
24 |
46 |
64 |
6d |
7d |
8d |
96 |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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Mature sequence |
Asu-Mir-5361_5p |
mirBase accession | MIMAT0021584 |
Sequence |
0- UGGGAUAUCUUGGAAGGUUUCU -22
Get sequence
|
Co-mature sequence |
Asu-Mir-5361_3p |
mirBase accession | MIMAT0021585 |
Sequence |
38- AAAGCUUCCAUUUUGUCCCUGA -60
Get sequence
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