| MirGeneDB ID | Asu-Mir-5360 |
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| Family name |
MIR-5360 (all species) |
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| Species |
Large roundworm (Ascaris suum) |
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| MiRBase ID |
asu-mir-5360
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
A.suum
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| Node of Origin (family) |
A.suum
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Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold151: 281104-281162 [-]
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| Seed |
CGAAUCG |
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Precursor
(pre-Mir +30nt flank) |
UGAACACAUCUCUGAGUGGGUGGCCAAAGAACGAAUCGUCGAAUCGGAUGUCUGUGCAUUGUGCGAGAAAUUCGAAUCGACAUUCGACCUGUGGCCAUCCGAUUACGACUGAAAUAGUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGAACACAUCUCUGAGU--| A AA C A G GUGCA
GGGUGGCCA AG CGAAU GUCGA UCGGAU UCU U
CCUACCGGU UC GCUUA CAGCU AGCUUA AGA U
UUGAUAAAGUCAGCAUUAG^ G CA - A A GCGUG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Ce |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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| Mature sequence |
Asu-Mir-5360_5p |
| mirBase accession | MIMAT0021582 |
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| Sequence |
0- ACGAAUCGUCGAAUCGGAUGUCU -23
Get sequence
|
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| Star sequence |
Asu-Mir-5360_3p* |
| mirBase accession | MIMAT0021583 |
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| Sequence |
37- AAAUUCGAAUCGACAUUCGACC -59
Get sequence
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