| MirGeneDB ID | Asu-Mir-5347 |
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| Family name |
MIR-5347 (all species) |
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| Species |
Large roundworm (Ascaris suum) |
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| MiRBase ID |
asu-mir-5347
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
A.suum
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| Node of Origin (family) |
A.suum
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Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold590: 33719-33778 [+]
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| Seed |
GACGGUG |
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Precursor
(pre-Mir +30nt flank) |
UGAUUAUCUGUUCUACCCUCUGCUUACAUUCGGCUUCCCUCAACGCCGCUGCUACCAGCCACAGCAGCGACGGUGUUGACGGAGGUCGAGUGUAGACAGAGGACUUCCCUUAAAGUGACU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGAUUAUCUGUUCUACC--| CU C C ACCAG
CUCUG UACAUUCGGCUUCC UCAACGCCG UGCU C
GAGAC AUGUGAGCUGGAGG AGUUGUGGC GCGA C
UCAGUGAAAUUCCCUUCAG^ AG C A CGACA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Ce |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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| Star sequence |
Asu-Mir-5347_5p* |
| mirBase accession | MIMAT0021544 |
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| Sequence |
0- CGGCUUCCCUCAACGCCGCUGCU -23
Get sequence
|
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| Mature sequence |
Asu-Mir-5347_3p |
| mirBase accession | MIMAT0021545 |
|---|
| Sequence |
37- CGACGGUGUUGACGGAGGUCGAG -60
Get sequence
|
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