MirGeneDB 2.1

MirGeneDB ID

Asu-Mir-5347

Family name MIR-5347 (all species)
Seed GACGGUG
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-5347
Paralogues
Orthologues
Node of Origin (locus) A. suum
Node of Origin (family) A. suum
Genome context
(ASU_PRJNA80881_plustraces)
Scaffold590: 33719-33778 [+]
Precursor
(pre-Mir +30nt flank)
UGAUUAUCUGUUCUACCCUCUGCUUACAUUCGGCUUCCCUCAACGCCGCUGCUACCAGCCACAGCAGCGACGGUGUUGACGGAGGUCGAGUGUAGACAGAGGACUUCCCUUAAAGUGACU
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Structure
        10          20        30        40        50         
UGAUUAUCUGUUCUACC--|    CU              C         C    ACCAG 
                   CUCUG  UACAUUCGGCUUCC UCAACGCCG UGCU     C
                   GAGAC  AUGUGAGCUGGAGG AGUUGUGGC GCGA     C
UCAGUGAAAUUCCCUUCAG^    AG              C         A    CGACA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
0h 11 12 24 46 64 6d 7d 8d 96 Em La Ov Se Sp Te Zy
Star sequence

Asu-Mir-5347_5p*

mirBase accessionMIMAT0021544
Sequence
0- CGGCUUCCCUCAACGCCGCUGCU -23
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Mature sequence

Asu-Mir-5347_3p

mirBase accessionMIMAT0021545
Sequence
37- CGACGGUGUUGACGGAGGUCGAG -60
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