| MirGeneDB ID | Asu-Mir-5342 |
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| Family name |
MIR-5342 (all species) |
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| Species |
Large roundworm (Ascaris suum) |
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| MiRBase ID |
asu-mir-5342
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
A.suum
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| Node of Origin (family) |
A.suum
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Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold122: 2401266-2401323 [-]
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| Seed |
AAUAUCA |
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Precursor
(pre-Mir +30nt flank) |
UGAUUCCAGAAGCGCUGACUUGAGUGCAUUACUCGUCAACCAGUAAUAUUAUGUUUUAAUGACCAUAAUAUCACUGGCUUACGGGAAAUGGCCUUUGGUCCCUAUGCUUCACAUGUGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGAUUCCAGAAGCGCUG--| U UG A CAA A UUUU
ACU GAG CAUU CUCGU CCAGU AUAUUAUG A
UGG UUC GUAA GGGCA GGUCA UAUAAUAC A
CGUGUACACUUCGUAUCCC^ U CG A UUC C CAGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Ce |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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| Star sequence |
Asu-Mir-5342_5p* |
| mirBase accession | MIMAT0021517 |
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| Sequence |
0- ACUCGUCAACCAGUAAUAUUAUG -23
Get sequence
|
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| Mature sequence |
Asu-Mir-5342_3p |
| mirBase accession | MIMAT0021518 |
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| Sequence |
35- UAAUAUCACUGGCUUACGGGAAA -58
Get sequence
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