MirGeneDB 3.0
MirGeneDB ID

Aqu-Mir-2020

Family name MIR-2020 (all species)
Species Amphimedon (Amphimedon queenslandica)
MiRBase ID aqu-mir-2020
Paralogues
Orthologues
Node of Origin (locus) Demospongiae
Node of Origin (family) Demospongiae
Genome context
(GCF_000090795.1_v1.0_SPONGE)		 NW_003546456.1: 86352-86455 [-] Ensembl
Seed GGGUAGU
Precursor
(pre-Mir +30nt flank)		 
UUACUCAGAUACCACAGGGAUUUCCAGUGCUGGGUAGUGUGUCUUUUCGGAAUACAGUCACAAACCAGACUGACCGGUUUCUCAUUAUAACCGGACUGACAGGUUUCUCAUUCCGGAAGGGCAUACUAACCAGCACUGGGUCCCAGACGGAAACCAGACGGAUA
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Structure
        10            20        30        40        50        60        70        80 
UUACUCAGAUACCACAG----|   UU          G                 AUACAGUCACAAACCAGACUGACCGGUUU 
                     GGAU  CCAGUGCUGG UAGUGUGUCUUUUCGGA                             C
                     CCUG  GGUCACGACC AUCAUACGGGAAGGCCU                             U
AUAGGCAGACCAAAGGCAGAC^   --          A                 UACUCUUUGGACAGUCAGGCCAAUAUUAC 
  160       150       140         130       120       110       100        90
Deep sequencing
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CommentThis miRNA family is only present in G3 + G4 demospoonges.
3' NTU No
MotifsNo
Tissue expression
- +
Ad Co Ju Pr
Mature sequence

Aqu-Mir-2020_5p
mirBase accessionMIMAT0009698
Sequence 
0- UGGGUAGUGUGUCUUUUCGGA -21
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Star sequence

Aqu-Mir-2020_3p*
mirBase accessionMIMAT0009699
Sequence 
83- CGGAAGGGCAUACUAACCAGC -104
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