| MirGeneDB ID | Aca-Mir-5412 |
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| Family name |
MIR-5412 (all species) |
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| Species |
Green anole lizard (Anolis carolinensis) |
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| MiRBase ID |
aca-mir-5412
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
A. carolinensis
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| Node of Origin (family) |
A. carolinensis
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Genome context
(anoCar2) |
GL343214.1: 285133-285189 [-]
UCSC
Ensembl
|
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| Seed |
AGGGUCC |
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Precursor
(pre-Mir +30nt flank) |
UAAUCAGUGGAGAAAGGAGGAGUGGCAGAGAAGGGUCCAGGUUUUUUUCUUGUGAAUUUAAUUAAAGGAAAAUUUCUGGGUGCUUUUCUGCUGUACCCAUCUACACACAGAGAAAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAAUCAGUGGAGAAAGGA--| A UG G UU GUGAAU
GG G GCAGAGAAG GUCCAGG UUUUUCUU \
CC U CGUCUUUUC UGGGUCU AAAAGGAA U
GUAAAGAGACACACAUCUAC^ A GU G UU AUUAAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Aca-Mir-5412_5p |
| mirBase accession | MIMAT0022030 |
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| Sequence |
0- AAGGGUCCAGGUUUUUUUCUU -21
Get sequence
|
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| Star sequence |
Aca-Mir-5412_3p* |
| mirBase accession | MIMAT0022031 |
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| Sequence |
36- GGAAAAUUUCUGGGUGCUUUU -57
Get sequence
|
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