MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-375-P13

Family name MIR-375 (all species)
Seed UUGUUCG
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-375
Paralogues Xla-Mir-375-P14 
Orthologues Aae-Mir-375  Aca-Mir-375  Ami-Mir-375  Asu-Mir-375  Bfl-Mir-375  Bge-Mir-375  Bla-Mir-375  Bpl-Mir-375  Bta-Mir-375  Cbr-Mir-375  Cel-Mir-375  Cfa-Mir-375  Cin-Mir-375  Cli-Mir-375  Cpi-Mir-375  Cpo-Mir-375  Cte-Mir-375  Dan-Mir-375  Dma-Mir-375  Dme-Mir-375  Dmo-Mir-375  Dno-Mir-375  Dpu-Mir-375  Dsi-Mir-375  Dya-Mir-375  Ebu-Mir-375  Efe-Mir-375  Esc-Mir-375  Ete-Mir-375  Gga-Mir-375  Gja-Mir-375  Hme-Mir-375  Hsa-Mir-375  Isc-Mir-375  Lan-Mir-375  Lch-Mir-375  Lgi-Mir-375  Loc-Mir-375  Mdo-Mir-375  Mml-Mir-375  Mmu-Mir-375  Npo-Mir-375  Oan-Mir-375  Obi-Mir-375  Ocu-Mir-375  Ovu-Mir-375  Pbv-Mir-375  Pfl-Mir-375  Pmi-Mir-375  Rno-Mir-375  Sha-Mir-375  Sko-Mir-375  Spt-Mir-375  Spu-Mir-375  Sto-Mir-375  Tca-Mir-375  Tgu-Mir-375  Xtr-Mir-375 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)
NC_030740.1: 52366618-52366675 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUGAGCCACACUAGCUCUGUACUUGCCUGACGUCGAGCCAGACGUGCAAUGCUUUGUAACAACGUUUUGUUCGUUCGGCUCGCGUUAAGCAGGUGCGGCUUGUCUGCUGUCUGUGGU
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Structure
        10          20        30        40        50         
GGUGAGCCACACUAGCU--|         C     U      AG   U    U  UUUGU 
                   CUGUACUUGC UGACG CGAGCC  ACG GCAA GC     \
                   GGCGUGGACG AUUGC GCUCGG  UGC UGUU UG     A
UGGUGUCUGUCGUCUGUUC^         A     -      CU   U    U  CAACA 
      110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Eg He Re St St St St
Star sequence

Xla-Mir-375-P13_5p*

mirBase accessionMIMAT0046590
Sequence
0- ACGUCGAGCCAGACGUGCAAUGC -23
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Mature sequence

Xla-Mir-375-P13_3p

mirBase accessionMIMAT0046591
Sequence
36- UUUGUUCGUUCGGCUCGCGUUA -58
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