MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-17-P2a4

Family name MIR-17 (all species)
Seed AAGGUGC
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-18b
Paralogues Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xla-Mir-17-P2a3  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4 
Orthologues Aca-Mir-17-P2a  Ami-Mir-17-P2a  Bta-Mir-17-P2a  Cfa-Mir-17-P2a  Cli-Mir-17-P2a  Cmi-Mir-17-P2a  Cpi-Mir-17-P2a  Cpo-Mir-17-P2a  Dno-Mir-17-P2a  Ete-Mir-17-P2a  Gga-Mir-17-P2a  Gja-Mir-17-P2a  Hsa-Mir-17-P2a  Lch-Mir-17-P2a  Loc-Mir-17-P2a  Mdo-Mir-17-P2a  Mml-Mir-17-P2a  Mmu-Mir-17-P2a  Mun-Mir-17-P2a  Oan-Mir-17-P2a  Ocu-Mir-17-P2a  Pbv-Mir-17-P2a  Rno-Mir-17-P2a  Sha-Mir-17-P2a  Spt-Mir-17-P2a  Sto-Mir-17-P2a  Tgu-Mir-17-P2a  Xtr-Mir-17-P2a 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030727.1: 104999254-104999318 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2a4)
Mir-92-P1a4 NC_030727.1: 104998709-104998768 [-] UCSC Ensembl
Mir-19-P2a4 NC_030727.1: 104998831-104998891 [-] UCSC Ensembl
Mir-17-P2a4 NC_030727.1: 104999254-104999318 [-] UCSC Ensembl
Mir-17-P1a4 NC_030727.1: 104999384-104999445 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGUGUGUCUGUAUAUUGUGCCUUUUGUCCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAAAGGUGCCUAAUCACUGAAGGUUUUU
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Structure
        10          20         30         40        50        60 
GCGUGUGUCUGUAUAUU-- UG        -  U-|   U   UC   U    A   UGAAGUA 
                   G  CCUUUUGU CC  AAGG GCA  UAG GCAG UAG       G
                   C  GGAAAAUA GG  UUCC CGU  AUC CGUC AUC       A
UUUUUGGAAGUCACUAAUC GU        C  UC^   U   GA   C    -   UACGAUU 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Mir-17-P2a4_5p

mirBase accessionMIMAT0046497
Sequence
0- UAAGGUGCAUCUAGUGCAGAUAG -23
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Star sequence

Xla-Mir-17-P2a4_3p*

mirBase accessionMIMAT0046498
Sequence
41- ACUGCCCUAAGUGCUCCUUCUGGC -65
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