Mir-17-P2a

MirGeneDB ID

Bta-Mir-17-P2a

Family name

MIR-17 (all species)

Seed

AAGGUGC

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-18a

Paralogues

Bta-Mir-17-P1a Bta-Mir-17-P1c Bta-Mir-17-P1d Bta-Mir-17-P2c Bta-Mir-17-P4a Bta-Mir-17-P4c Bta-Mir-17-P4d

Orthologues

Aca-Mir-17-P2a Ami-Mir-17-P2a Cfa-Mir-17-P2a Cli-Mir-17-P2a Cmi-Mir-17-P2a Cpi-Mir-17-P2a Cpo-Mir-17-P2a Dno-Mir-17-P2a Dre-Mir-17-P2a1 Dre-Mir-17-P2a2 Ete-Mir-17-P2a Gga-Mir-17-P2a Gja-Mir-17-P2a Gmo-Mir-17-P2a1 Gmo-Mir-17-P2a2 Hsa-Mir-17-P2a Lch-Mir-17-P2a Loc-Mir-17-P2a Mal-Mir-17-P2a2a Mal-Mir-17-P2a2b Mdo-Mir-17-P2a Mml-Mir-17-P2a Mmu-Mir-17-P2a Mun-Mir-17-P2a Oan-Mir-17-P2a Ocu-Mir-17-P2a Pbv-Mir-17-P2a Rno-Mir-17-P2a Sha-Mir-17-P2a Spt-Mir-17-P2a Sto-Mir-17-P2a Tgu-Mir-17-P2a Tni-Mir-17-P2a1 Tni-Mir-17-P2a2 Xla-Mir-17-P2a3 Xla-Mir-17-P2a4 Xtr-Mir-17-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037339.1: 65689565-65689629 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2a)

Mir-17-P1a NC_037339.1: 65689430-65689489 [+] UCSC Ensembl
Mir-17-P2a NC_037339.1: 65689565-65689629 [+] UCSC Ensembl
Mir-19-P1a NC_037339.1: 65689712-65689769 [+] UCSC Ensembl
Mir-17-P4a NC_037339.1: 65689875-65689933 [+] UCSC Ensembl
Mir-19-P2a NC_037339.1: 65690011-65690071 [+] UCSC Ensembl
Mir-92-P1a NC_037339.1: 65690128-65690186 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGCCUGCUGGUGUUGAGCGCUUUUUGUUCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAGAAGUUAUGCUUCCAUCCAGUGAGCC

Get precursor sequence

Structure

        10          20        30          40        50        60 
GGGCCUGCUGGUGUUGAGC--         U   --|  U   UC   U    A   UGAAGUA 
                     GCUUUUUGU CUA  AGG GCA  UAG GCAG UAG       G
                     UGAAGAAUA GGU  UCC CGU  AUC CGUC AUC       A
CCGAGUGACCUACCUUCGUAU         C   CU^  U   GA   C    -   UACGAUU 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-17-P2a_5p

mirBase accession

MIMAT0003526

Sequence

0- UAAGGUGCAUCUAGUGCAGAUAG -23

Get sequence

Proposed targets

TargetScanVert: bta-miR-18a

Star sequence

Bta-Mir-17-P2a_3p*

mirBase accession

None

Sequence

41- ACUGCCCUAAGUGCUCCUUCUGGC -65

Get sequence