MirGeneDB ID | Sto-Mir-17-P2a |
Family name |
MIR-17 (all species) |
Seed |
AAGGUGC |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-17-P1a
Sto-Mir-17-P1b
Sto-Mir-17-P1c
Sto-Mir-17-P1d
Sto-Mir-17-P2c
Sto-Mir-17-P3b
Sto-Mir-17-P4a
Sto-Mir-17-P4b
Sto-Mir-17-P4c
|
Orthologues |
Aca-Mir-17-P2a
Ami-Mir-17-P2a
Bta-Mir-17-P2a
Cfa-Mir-17-P2a
Cli-Mir-17-P2a
Cmi-Mir-17-P2a
Cpi-Mir-17-P2a
Cpo-Mir-17-P2a
Dno-Mir-17-P2a
Dre-Mir-17-P2a1
Dre-Mir-17-P2a2
Ete-Mir-17-P2a
Gga-Mir-17-P2a
Gja-Mir-17-P2a
Gmo-Mir-17-P2a1
Gmo-Mir-17-P2a2
Hsa-Mir-17-P2a
Lch-Mir-17-P2a
Loc-Mir-17-P2a
Mal-Mir-17-P2a2a
Mal-Mir-17-P2a2b
Mdo-Mir-17-P2a
Mml-Mir-17-P2a
Mmu-Mir-17-P2a
Mun-Mir-17-P2a
Oan-Mir-17-P2a
Ocu-Mir-17-P2a
Pbv-Mir-17-P2a
Rno-Mir-17-P2a
Sha-Mir-17-P2a
Spt-Mir-17-P2a
Tgu-Mir-17-P2a
Tni-Mir-17-P2a1
Tni-Mir-17-P2a2
Xla-Mir-17-P2a3
Xla-Mir-17-P2a4
Xtr-Mir-17-P2a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_003427355_STO_add) |
BFAA01005422.1: 25568-25632 [-]
|
Precursor (pre-Mir +30nt flank) |
CGCUUGACUUCUUAGUAAAGUCUCUUGUGUUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAGUAGAAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAGUAACUCUGAUCAGCUUUGGUGUGCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGCUUGACUUCUUAGUAA-- CU --| U UC U A UGAAGUA
AGU CUUGUGUUA AGG GCA UAG GCAG UAG G
UCA GAAUACGGU UCC CGU AUC CGUC AUC A
CCGUGUGGUUUCGACUAGUC AU CU^ U GA C - UAAGAUG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Sto-Mir-17-P2a_5p |
mirBase accession | None |
Sequence |
0- UAAGGUGCAUCUAGUGCAGAUAG -23
Get sequence
|
Star sequence |
Sto-Mir-17-P2a_3p* |
mirBase accession | None |
Sequence |
41- ACUGCCCUAAGUGCUCCUUCUGGC -65
Get sequence
|