MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-17-P2a

Family name MIR-17 (all species)
Seed AAGGUGC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-18a
Paralogues Cpo-Mir-17-P1a  Cpo-Mir-17-P1c  Cpo-Mir-17-P1d  Cpo-Mir-17-P2c  Cpo-Mir-17-P4a  Cpo-Mir-17-P4c  Cpo-Mir-17-P4d 
Orthologues Aca-Mir-17-P2a  Ami-Mir-17-P2a  Bta-Mir-17-P2a  Cfa-Mir-17-P2a  Cli-Mir-17-P2a  Cmi-Mir-17-P2a  Cpi-Mir-17-P2a  Dno-Mir-17-P2a  Dre-Mir-17-P2a1  Dre-Mir-17-P2a2  Ete-Mir-17-P2a  Gga-Mir-17-P2a  Gja-Mir-17-P2a  Gmo-Mir-17-P2a1  Gmo-Mir-17-P2a2  Hsa-Mir-17-P2a  Lch-Mir-17-P2a  Loc-Mir-17-P2a  Mal-Mir-17-P2a2a  Mal-Mir-17-P2a2b  Mdo-Mir-17-P2a  Mml-Mir-17-P2a  Mmu-Mir-17-P2a  Mun-Mir-17-P2a  Oan-Mir-17-P2a  Ocu-Mir-17-P2a  Pbv-Mir-17-P2a  Rno-Mir-17-P2a  Sha-Mir-17-P2a  Spt-Mir-17-P2a  Sto-Mir-17-P2a  Tgu-Mir-17-P2a  Tni-Mir-17-P2a1  Tni-Mir-17-P2a2  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xtr-Mir-17-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)
scaffold_5: 32029271-32029335 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-17-P2a)
Mir-92-P1a scaffold_5: 32028701-32028759 [-] UCSC
Mir-19-P2a scaffold_5: 32028817-32028877 [-] UCSC
Mir-17-P4a scaffold_5: 32028969-32029027 [-] UCSC
Mir-19-P1a scaffold_5: 32029133-32029190 [-] UCSC
Mir-17-P2a scaffold_5: 32029271-32029335 [-] UCSC
Mir-17-P1a scaffold_5: 32029418-32029477 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GGGUCUGCUGAUUUUGAGUGCUUUUUGUUCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAGAAGUUAUGUUUUCAUCUUAAUCAAG
Get precursor sequence
Structure
        10          20        30          40        50        60 
GGGUCUGCUGAUUUUGAGU--         U   --|  U   UC   U    A   UGAAGUA 
                     GCUUUUUGU CUA  AGG GCA  UAG GCAG UAG       G
                     UGAAGAAUA GGU  UCC CGU  AUC CGUC AUC       A
GAACUAAUUCUACUUUUGUAU         C   CU^  U   GA   C    -   UACGAUU 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Cpo-Mir-17-P2a_5p

mirBase accessionMIMAT0046859
Sequence
0- UAAGGUGCAUCUAGUGCAGAUAG -23
Get sequence
Star sequence

Cpo-Mir-17-P2a_3p*

mirBase accessionMIMAT0046860
Sequence
41- ACUGCCCUAAGUGCUCCUUCUGGC -65
Get sequence