MirGeneDB ID | Xla-Mir-15-P1b2 |
Family name |
MIR-15 (all species) |
Seed |
AGCAGCA |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
xla-mir-15b
|
Paralogues |
Xla-Mir-15-P1a3
Xla-Mir-15-P1a4
Xla-Mir-15-P1b1
Xla-Mir-15-P1c1
Xla-Mir-15-P1c2
Xla-Mir-15-P2a3
Xla-Mir-15-P2a4
Xla-Mir-15-P2b1
Xla-Mir-15-P2b2
Xla-Mir-15-P2c1
Xla-Mir-15-P2c2
|
Orthologues |
Aca-Mir-15-P1b
Ami-Mir-15-P1b
Bta-Mir-15-P1b
Cfa-Mir-15-P1b
Cin-Mir-15-P1
Cli-Mir-15-P1b
Cmi-Mir-15-P1b
Cpi-Mir-15-P1b
Cpo-Mir-15-P1b
Dno-Mir-15-P1b
Dre-Mir-15-P1b
Ete-Mir-15-P1b
Gga-Mir-15-P1b
Gja-Mir-15-P1b
Gmo-Mir-15-P1b
Hsa-Mir-15-P1b
Lch-Mir-15-P1b
Loc-Mir-15-P1b
Mal-Mir-15-P1b
Mml-Mir-15-P1b
Mmu-Mir-15-P1b
Mun-Mir-15-P1b
Oan-Mir-15-P1b
Ocu-Mir-15-P1b
Pbv-Mir-15-P1b
Rno-Mir-15-P1b
Sha-Mir-15-P1b
Spt-Mir-15-P1b
Sto-Mir-15-P1b
Tgu-Mir-15-P1b
Tni-Mir-15-P1b
Xtr-Mir-15-P1b
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Olfactores
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030733.1: 95597674-95597731 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAGAUUGUUACUGAAUGUCCUAAAGAAGUGUAGCAGCACAUCAUGAUUUGCAUGCUGUAUUAGAUUCUAAUCAUUAUUUGCUGCUUCAUGAUAUUGGGGAAAAUCUAUCACUUUGUGC
Get precursor sequence
|
Structure | 10 20 30 40 50
GAGAUUGUUACUGAAUG--| AGAA U C C UGCAUGCUG
UCCUAA GUG AGCAGCA AU AUGAUU U
GGGGUU UAC UCGUCGU UA UACUAA A
CGUGUUUCACUAUCUAAAA^ AUAG U U U UCUUAGAUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Xla-Mir-15-P1b2_5p |
mirBase accession | MIMAT0046472 |
Sequence |
0- UAGCAGCACAUCAUGAUUUGCA -22
Get sequence
|
Co-mature sequence |
Xla-Mir-15-P1b2_3p |
mirBase accession | MIMAT0046473 |
Sequence |
36- CUAAUCAUUAUUUGCUGCUUCA -58
Get sequence
|