MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-15-P1b

Family name MIR-15 (all species)
Seed AGCAGCG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-15c
Paralogues Dre-Mir-15-P1a1  Dre-Mir-15-P1a2  Dre-Mir-15-P1d  Dre-Mir-15-P2a1  Dre-Mir-15-P2a2  Dre-Mir-15-P2b  Dre-Mir-15-P2c-v1  Dre-Mir-15-P2c-v2  Dre-Mir-15-P2d 
Orthologues Aca-Mir-15-P1b  Ami-Mir-15-P1b  Bta-Mir-15-P1b  Cfa-Mir-15-P1b  Cin-Mir-15-P1  Cli-Mir-15-P1b  Cmi-Mir-15-P1b  Cpi-Mir-15-P1b  Cpo-Mir-15-P1b  Dno-Mir-15-P1b  Ete-Mir-15-P1b  Gga-Mir-15-P1b  Gja-Mir-15-P1b  Gmo-Mir-15-P1b  Hsa-Mir-15-P1b  Lch-Mir-15-P1b  Loc-Mir-15-P1b  Mal-Mir-15-P1b  Mml-Mir-15-P1b  Mmu-Mir-15-P1b  Mun-Mir-15-P1b  Oan-Mir-15-P1b  Ocu-Mir-15-P1b  Pbv-Mir-15-P1b  Rno-Mir-15-P1b  Sha-Mir-15-P1b  Spt-Mir-15-P1b  Sto-Mir-15-P1b  Tgu-Mir-15-P1b  Tni-Mir-15-P1b  Xla-Mir-15-P1b1  Xla-Mir-15-P1b2  Xtr-Mir-15-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(danRer11)
chr15: 1543699-1543757 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1b)
Mir-15-P1b chr15: 1543699-1543757 [+] UCSC Ensembl
Mir-15-P2b chr15: 1543869-1543933 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGGUGGAUGAAAUCAACCUUAGACCGCUAAAGCAGCGCGUCAUGGUUUUCAACAUUAGAGAAGGUGCAAGCCAUCAUUUGCUGCUCUAGAGUUUUAAGGCAUUCUCCUACACUAAACC
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Structure
        10          20        30        40        50         
AUGGUGGAUGAAAUCAA--|      CCG   A       C  C       U  ACAUUA 
                   CCUUAGA   CUA AGCAGCG GU AUGGUUU CA      \
                   GGAAUUU   GAU UCGUCGU UA UACCGAA GU      G
CCAAAUCACAUCCUCUUAC^      UGA   C       U  C       C  GGAAGA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-15-P1b_5p

mirBase accessionMIMAT0003764
Sequence
0- AAGCAGCGCGUCAUGGUUUUCA -22
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Proposed targets TargetScanFish: dre-miR-15c
Star sequence

Dre-Mir-15-P1b_3p*

mirBase accessionNone
Sequence
37- CAAGCCAUCAUUUGCUGCUCUA -59
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