MirGeneDB 2.1
MirGeneDB ID

Cin-Mir-15-P1

Family name MIR-15 (all species)
Seed AGCAGCA
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-15
Paralogues Cin-Mir-15-P2 
Orthologues Aca-Mir-15-P1b  Aca-Mir-15-P1c  Ami-Mir-15-P1a  Ami-Mir-15-P1b  Ami-Mir-15-P1c  Ami-Mir-15-P1d  Bta-Mir-15-P1a  Bta-Mir-15-P1b  Bta-Mir-15-P1c  Bta-Mir-15-P1d  Cfa-Mir-15-P1a  Cfa-Mir-15-P1b  Cfa-Mir-15-P1c  Cfa-Mir-15-P1d  Cli-Mir-15-P1a  Cli-Mir-15-P1b  Cli-Mir-15-P1c  Cmi-Mir-15-P1a  Cmi-Mir-15-P1b  Cmi-Mir-15-P1c  Cpi-Mir-15-P1a  Cpi-Mir-15-P1b  Cpi-Mir-15-P1c  Cpo-Mir-15-P1a  Cpo-Mir-15-P1b  Cpo-Mir-15-P1c  Cpo-Mir-15-P1d  Dno-Mir-15-P1a  Dno-Mir-15-P1b  Dno-Mir-15-P1c  Dno-Mir-15-P1d  Dre-Mir-15-P1a1  Dre-Mir-15-P1a2  Dre-Mir-15-P1b  Dre-Mir-15-P1d  Ebu-Mir-15-P1e  Ete-Mir-15-P1a  Ete-Mir-15-P1b  Ete-Mir-15-P1c  Ete-Mir-15-P1d  Gga-Mir-15-P1a  Gga-Mir-15-P1b  Gga-Mir-15-P1c  Gja-Mir-15-P1a  Gja-Mir-15-P1b  Gja-Mir-15-P1c  Gmo-Mir-15-P1a2  Gmo-Mir-15-P1b  Hsa-Mir-15-P1a  Hsa-Mir-15-P1b  Hsa-Mir-15-P1c  Hsa-Mir-15-P1d  Lch-Mir-15-P1a  Lch-Mir-15-P1b  Lch-Mir-15-P1c  Loc-Mir-15-P1a  Loc-Mir-15-P1b  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Loc-Mir-15-P1d  Mal-Mir-15-P1a2  Mal-Mir-15-P1b  Mdo-Mir-15-P1a  Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1c-v2  Mdo-Mir-15-P1d  Mml-Mir-15-P1a  Mml-Mir-15-P1b  Mml-Mir-15-P1c  Mml-Mir-15-P1d  Mmu-Mir-15-P1a  Mmu-Mir-15-P1b  Mmu-Mir-15-P1c-v1  Mmu-Mir-15-P1c-v2  Mmu-Mir-15-P1c-v3  Mmu-Mir-15-P1d  Mun-Mir-15-P1a  Mun-Mir-15-P1b  Mun-Mir-15-P1c  Oan-Mir-15-P1a  Oan-Mir-15-P1b  Oan-Mir-15-P1c  Oan-Mir-15-P1d  Ocu-Mir-15-P1a  Ocu-Mir-15-P1b  Ocu-Mir-15-P1c  Ocu-Mir-15-P1d  Pbv-Mir-15-P1b  Pbv-Mir-15-P1c  Pma-Mir-15-P1o1  Pma-Mir-15-P1o2  Pma-Mir-15-P1o3  Rno-Mir-15-P1a  Rno-Mir-15-P1b  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Rno-Mir-15-P1d  Sha-Mir-15-P1a  Sha-Mir-15-P1b  Sha-Mir-15-P1c  Sha-Mir-15-P1d  Spt-Mir-15-P1a  Spt-Mir-15-P1b  Spt-Mir-15-P1c  Sto-Mir-15-P1a  Sto-Mir-15-P1b  Sto-Mir-15-P1d  Tgu-Mir-15-P1a  Tgu-Mir-15-P1b  Tgu-Mir-15-P1c  Tni-Mir-15-P1a2  Tni-Mir-15-P1b  Xla-Mir-15-P1a3  Xla-Mir-15-P1a4  Xla-Mir-15-P1b1  Xla-Mir-15-P1b2  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1a  Xtr-Mir-15-P1b  Xtr-Mir-15-P1c 
Node of Origin (locus) Olfactores
Node of Origin (family) Olfactores
Genome context
(ci3)		 7: 3345446-3345500 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1)		 Mir-15-P2 7: 3345089-3345142 [-] UCSC Ensembl
Mir-15-P1 7: 3345446-3345500 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUAGCAAUUCUACUUAUCCACGUAUCGUAGUAGCAGCACACAAAACUAUCAUUUUCUAAUUUGCUGGUUUCUGUGAGCUGCUUCACUGUUACAGUGAUUUAUCAUCAAAAACAAC
Get precursor sequence
Structure
        10         20         30          40         50      
UUAGCAAUUCUACUUAUC-   -   UCG    --      A    -|     U  UUUU 
                   CAC GUA   UAGU  AGCAGC CACA AAACUA CA    C
                   GUG CAU   GUCA  UCGUCG GUGU UUUGGU GU    U
CAACAAAAACUACUAUUUA   A   U--    CU      A    C^     C  UUAA 
   110       100        90          80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Mature sequence

Cin-Mir-15-P1_5p
mirBase accessionMIMAT0016397
Sequence 
0- UAGCAGCACACAAAACUAUCA -21
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Star sequence

Cin-Mir-15-P1_3p*
mirBase accessionMIMAT0016398
Sequence 
33- CUGGUUUCUGUGAGCUGCUUCA -55
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