Mir-506-P23

MirGeneDB ID

Mmu-Mir-506-P23

Family name

MIR-506 (all species)

Seed

AUCUAGU

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-878

Paralogues

Mmu-Mir-506-P1 Mmu-Mir-506-P2 Mmu-Mir-506-P7 Mmu-Mir-506-P14 Mmu-Mir-506-P15a Mmu-Mir-506-P15b1 Mmu-Mir-506-P15b2 Mmu-Mir-506-P15c1 Mmu-Mir-506-P15c2 Mmu-Mir-506-P15d Mmu-Mir-506-P16 Mmu-Mir-506-P17 Mmu-Mir-506-P18 Mmu-Mir-506-P19 Mmu-Mir-506-P20 Mmu-Mir-506-P21 Mmu-Mir-506-P22 Mmu-Mir-506-P24 Mmu-Mir-506-P25 Mmu-Mir-506-P26 Mmu-Mir-506-P27

Orthologues

Rno-Mir-506-P23

Node of Origin (locus)

Muridae

Node of Origin (family)

Eutheria

Genome context
(mm10)

chrX: 66801518-66801575 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P23)

Mir-506-P20 chrX: 66776760-66776815 [-] UCSC Ensembl
Mir-506-P21 chrX: 66777266-66777322 [-] UCSC Ensembl
Mir-506-P19 chrX: 66780376-66780432 [-] UCSC Ensembl
Mir-506-P26 chrX: 66780767-66780824 [-] UCSC Ensembl
Mir-506-P27 chrX: 66789899-66789957 [-] UCSC Ensembl
Mir-506-P17 chrX: 66792598-66792655 [-] UCSC Ensembl
Mir-506-P18 chrX: 66796809-66796869 [-] UCSC Ensembl
Mir-506-P14 chrX: 66799235-66799294 [-] UCSC Ensembl
Mir-506-P24 chrX: 66800540-66800597 [-] UCSC Ensembl
Mir-506-P23 chrX: 66801518-66801575 [-] UCSC Ensembl
Mir-506-P25 chrX: 66801954-66802011 [-] UCSC Ensembl
Mir-506-P22 chrX: 66810438-66810494 [-] UCSC Ensembl
Mir-506-P16 chrX: 66813961-66814017 [-] UCSC Ensembl
Mir-506-P15d chrX: 66822655-66822713 [-] UCSC Ensembl
Mir-506-P15c2 chrX: 66825965-66826025 [-] UCSC Ensembl
Mir-506-P15b2 chrX: 66829212-66829270 [-] UCSC Ensembl
Mir-506-P15c1 chrX: 66832527-66832587 [-] UCSC Ensembl
Mir-506-P15b1 chrX: 66835774-66835832 [-] UCSC Ensembl
Mir-506-P15a chrX: 66839063-66839121 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUAAUGAAAAGAGUGUUGUGUGCAAUGCUUUAUCUAGUUGGAUGUCAAGACACGUGAAACUUAAGUGCAUGACACCACACUGGGUAGAGGAGGGCUCACAGUGUUCCUCAUUUGUUGU

Get precursor sequence

Structure

        10          20        30         40        50         
UUAAUGAAAAGAGUGUU--   U  AAUG           -|  A     AGA   GUGAA 
                   GUG GC    CUUUAUCUAGU UGG UGUCA   CAC     \
                   CAC CG    GAGAUGGGUCA ACC ACAGU   GUG     A
UGUUGUUUACUCCUUGUGA   U  GGAG           C^  -     AC-   AAUUC 
      110       100        90        80         70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Mature sequence

Mmu-Mir-506-P23_5p

mirBase accession

MIMAT0004932

Sequence

0- UAUCUAGUUGGAUGUCAAGACAC -23

Get sequence

Proposed targets

microrna.org: MIMAT0004932
TargetScanVert: mmu-miR-878-5p
miRDB: MIMAT0004932

Co-mature sequence

Mmu-Mir-506-P23_3p

mirBase accession

MIMAT0004933

Sequence

36- GCAUGACACCACACUGGGUAGA -58

Get sequence

Proposed targets

microrna.org: MIMAT0004933
TargetScanVert: mmu-miR-878-3p
miRDB: MIMAT0004933