MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-506-P24

Family name MIR-506 (all species)
Seed ACUCCAU
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-880
Paralogues Mmu-Mir-506-P1  Mmu-Mir-506-P2  Mmu-Mir-506-P7  Mmu-Mir-506-P14  Mmu-Mir-506-P15a  Mmu-Mir-506-P15b1  Mmu-Mir-506-P15b2  Mmu-Mir-506-P15c1  Mmu-Mir-506-P15c2  Mmu-Mir-506-P15d  Mmu-Mir-506-P16  Mmu-Mir-506-P17  Mmu-Mir-506-P18  Mmu-Mir-506-P19  Mmu-Mir-506-P20  Mmu-Mir-506-P21  Mmu-Mir-506-P22  Mmu-Mir-506-P23  Mmu-Mir-506-P25  Mmu-Mir-506-P26  Mmu-Mir-506-P27 
Orthologues Rno-Mir-506-P24 
Node of Origin (locus) Muridae
Node of Origin (family) Eutheria
Genome context
(mm10)
chrX: 66800540-66800597 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P24)
Mir-506-P20 chrX: 66776760-66776815 [-] UCSC Ensembl
Mir-506-P21 chrX: 66777266-66777322 [-] UCSC Ensembl
Mir-506-P19 chrX: 66780376-66780432 [-] UCSC Ensembl
Mir-506-P26 chrX: 66780767-66780824 [-] UCSC Ensembl
Mir-506-P27 chrX: 66789899-66789957 [-] UCSC Ensembl
Mir-506-P17 chrX: 66792598-66792655 [-] UCSC Ensembl
Mir-506-P18 chrX: 66796809-66796869 [-] UCSC Ensembl
Mir-506-P14 chrX: 66799235-66799294 [-] UCSC Ensembl
Mir-506-P24 chrX: 66800540-66800597 [-] UCSC Ensembl
Mir-506-P23 chrX: 66801518-66801575 [-] UCSC Ensembl
Mir-506-P25 chrX: 66801954-66802011 [-] UCSC Ensembl
Mir-506-P22 chrX: 66810438-66810494 [-] UCSC Ensembl
Mir-506-P16 chrX: 66813961-66814017 [-] UCSC Ensembl
Mir-506-P15d chrX: 66822655-66822713 [-] UCSC Ensembl
Mir-506-P15c2 chrX: 66825965-66826025 [-] UCSC Ensembl
Mir-506-P15b2 chrX: 66829212-66829270 [-] UCSC Ensembl
Mir-506-P15c1 chrX: 66832527-66832587 [-] UCSC Ensembl
Mir-506-P15b1 chrX: 66835774-66835832 [-] UCSC Ensembl
Mir-506-P15a chrX: 66839063-66839121 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAUCACUGAACAAACUGUGUGCACUGCAAUACUCAGAUUGAUAUGAGUCACUUCCUAUUGCAUGUUACUCCAUCCUCUCUGAGUAGAGUAAGGCACACCAAUCACCAGUUUUGGUAC
Get precursor sequence
Structure
        10          20        30        40         50        
ACAUCACUGAACAAACU--      AC   AA        UU-|  AU    C  UUCCU 
                   GUGUGC  UGC  UACUCAGA   GAU  GAGU AC     A
                   CACACG  AUG  AUGAGUCU   CUA  CUCA UG     U
CAUGGUUUUGACCACUAAC      GA   AG        CUC^  C-    U  UACGU 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Star sequence

Mmu-Mir-506-P24_5p*

mirBase accessionMIMAT0017266
Sequence
0- UACUCAGAUUGAUAUGAGUCAC -22
Get sequence
Proposed targets TargetScanVert: mmu-miR-880-5p
miRDB: MIMAT0017266
Mature sequence

Mmu-Mir-506-P24_3p

mirBase accessionMIMAT0004844
Sequence
36- UACUCCAUCCUCUCUGAGUAGA -58
Get sequence
Proposed targets microrna.org: MIMAT0004844
TargetScanVert: mmu-miR-880-3p
miRDB: MIMAT0004844