MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-506-P23

Family name MIR-506 (all species)
Seed AUCUAGU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-878
Paralogues Rno-Mir-506-P1  Rno-Mir-506-P2  Rno-Mir-506-P6  Rno-Mir-506-P7  Rno-Mir-506-P14  Rno-Mir-506-P15  Rno-Mir-506-P17  Rno-Mir-506-P18  Rno-Mir-506-P19  Rno-Mir-506-P20  Rno-Mir-506-P21  Rno-Mir-506-P22  Rno-Mir-506-P24  Rno-Mir-506-P25  Rno-Mir-506-P26  Rno-Mir-506-P28 
Orthologues Mmu-Mir-506-P23 
Node of Origin (locus) Muridae
Node of Origin (family) Eutheria
Genome context
(rn6)
chrX: 151283471-151283527 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P23)
Mir-506-P20 chrX: 151252838-151252893 [-] UCSC Ensembl
Mir-506-P21 chrX: 151253328-151253384 [-] UCSC Ensembl
Mir-506-P19 chrX: 151260323-151260379 [-] UCSC Ensembl
Mir-506-P26 chrX: 151260712-151260770 [-] UCSC Ensembl
Mir-506-P17 chrX: 151272114-151272171 [-] UCSC Ensembl
Mir-506-P28 chrX: 151272836-151272891 [-] UCSC Ensembl
Mir-506-P18 chrX: 151274374-151274430 [-] UCSC Ensembl
Mir-506-P14 chrX: 151276038-151276097 [-] UCSC Ensembl
Mir-506-P24 chrX: 151281998-151282055 [-] UCSC Ensembl
Mir-506-P23 chrX: 151283471-151283527 [-] UCSC Ensembl
Mir-506-P25 chrX: 151283920-151283976 [-] UCSC Ensembl
Mir-506-P22 chrX: 151287797-151287853 [-] UCSC Ensembl
Mir-3580 chrX: 151295627-151295682 [-] UCSC Ensembl
Mir-506-P15 chrX: 151297377-151297433 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUUAAUAUAGAGUGUUGUGUGCAGUGCUUUAUCUAGUUGGCUGUCAGUCACGUGAAACUCAAGUGCAUGACACCAUACUGGGUAGAGGAGGGCUCACGGUGUUCUUCAUUUCUUGU
Get precursor sequence
Structure
        10          20        30         40        50        
AAUUAAUAUAGAGUGUU--   U  AGUG           -|  C     GU   GUGAA 
                   GUG GC    CUUUAUCUAGU UGG UGUCA  CAC     \
                   CAC CG    GAGAUGGGUCA ACC ACAGU  GUG     A
UGUUCUUUACUUCUUGUGG   U  GGAG           U^  -     AC   AACUC 
     110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
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Mature sequence

Rno-Mir-506-P23_5p

mirBase accessionNone
Sequence
0- UAUCUAGUUGGCUGUCAGUCAC -22
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Co-mature sequence

Rno-Mir-506-P23_3p

mirBase accessionMIMAT0005286
Sequence
35- GCAUGACACCAUACUGGGUAGA -57
Get sequence
Proposed targets microrna.org: MIMAT0005286
TargetScanVert: rno-miR-878
miRDB: MIMAT0005286