MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-506-P15d

Family name MIR-506 (all species)
Seed AUUUAGA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-465d
Paralogues Mmu-Mir-506-P1  Mmu-Mir-506-P2  Mmu-Mir-506-P7  Mmu-Mir-506-P14  Mmu-Mir-506-P15a  Mmu-Mir-506-P15b1  Mmu-Mir-506-P15b2  Mmu-Mir-506-P15c1  Mmu-Mir-506-P15c2  Mmu-Mir-506-P16  Mmu-Mir-506-P17  Mmu-Mir-506-P18  Mmu-Mir-506-P19  Mmu-Mir-506-P20  Mmu-Mir-506-P21  Mmu-Mir-506-P22  Mmu-Mir-506-P23  Mmu-Mir-506-P24  Mmu-Mir-506-P25  Mmu-Mir-506-P26  Mmu-Mir-506-P27 
Orthologues Rno-Mir-506-P15 
Node of Origin (locus) M. musculus
Node of Origin (family) Eutheria
Genome context
(mm10)
chrX: 66822655-66822713 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P15d)
Mir-506-P20 chrX: 66776760-66776815 [-] UCSC Ensembl
Mir-506-P21 chrX: 66777266-66777322 [-] UCSC Ensembl
Mir-506-P19 chrX: 66780376-66780432 [-] UCSC Ensembl
Mir-506-P26 chrX: 66780767-66780824 [-] UCSC Ensembl
Mir-506-P27 chrX: 66789899-66789957 [-] UCSC Ensembl
Mir-506-P17 chrX: 66792598-66792655 [-] UCSC Ensembl
Mir-506-P18 chrX: 66796809-66796869 [-] UCSC Ensembl
Mir-506-P14 chrX: 66799235-66799294 [-] UCSC Ensembl
Mir-506-P24 chrX: 66800540-66800597 [-] UCSC Ensembl
Mir-506-P23 chrX: 66801518-66801575 [-] UCSC Ensembl
Mir-506-P25 chrX: 66801954-66802011 [-] UCSC Ensembl
Mir-506-P22 chrX: 66810438-66810494 [-] UCSC Ensembl
Mir-506-P16 chrX: 66813961-66814017 [-] UCSC Ensembl
Mir-506-P15d chrX: 66822655-66822713 [-] UCSC Ensembl
Mir-506-P15c2 chrX: 66825965-66826025 [-] UCSC Ensembl
Mir-506-P15b2 chrX: 66829212-66829270 [-] UCSC Ensembl
Mir-506-P15c1 chrX: 66832527-66832587 [-] UCSC Ensembl
Mir-506-P15b1 chrX: 66835774-66835832 [-] UCSC Ensembl
Mir-506-P15a chrX: 66839063-66839121 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCUCCUUAAAGGCUUUGUAUGCAGUGCCCUAUUUAGAAUGGUACUGAUGUGAUGAAAUAAAAAAUUGAUCAGGGCCUUUCUGAGUAAGGCUUACCACCUUCUACGUUUAAUAUGACUU
Get precursor sequence
Structure
        10        20          30        40        50         
AUCUCCUUAAAGGCUUUGUAUGCAGU--|  C         U  UA     GUGAUGAAA 
                            GCC UAUUUAGAA GG  CUGAU         \
                            CGG AUGAGUCUU CC  GACUA         U
UUCAGUAUAAUUUGCAUCUUCCACCAUU^  A         U  GG     GUUAAAAAA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-506-P15d_5p

mirBase accessionMIMAT0029880
Sequence
0- UAUUUAGAAUGGUACUGAUGUGA -23
Get sequence
Proposed targets TargetScanVert: mmu-miR-465d-5p
miRDB: MIMAT0029880
Co-mature sequence

Mmu-Mir-506-P15d_3p

mirBase accessionMIMAT0029881
Sequence
37- GAUCAGGGCCUUUCUGAGUAAG -59
Get sequence
Proposed targets TargetScanVert: mmu-miR-465d-3p
miRDB: MIMAT0029881