Mir-216-P2b

MirGeneDB ID

Hsa-Mir-216-P2b

Family name

MIR-216 (all species)

Seed

AAUCUCA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-216a

Paralogues

Hsa-Mir-216-P2a

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2b Ami-Mir-216-P2b Asu-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2b Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2b Cgi-Mir-216-P2 Cli-Mir-216-P2b Cmi-Mir-216-P2b Cpi-Mir-216-P2b Cpo-Mir-216-P2b Dan-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2b Dpu-Mir-216-P2 Dre-Mir-216-P2b Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2b1 Efe-Mir-216-P2 Ete-Mir-216-P2b Gga-Mir-216-P2b Gja-Mir-216-P2b Gmo-Mir-216-P2b Hme-Mir-216-P2 Isc-Mir-216-P2 Lch-Mir-216-P2b Lgi-Mir-216-P2 Loc-Mir-216-P2b Mal-Mir-216-P2b Mdo-Mir-216-P2b Mml-Mir-216-P2b Mmu-Mir-216-P2b Mun-Mir-216-P2b Oan-Mir-216-P2b Ocu-Mir-216-P2b Pbv-Mir-216-P2b Pma-Mir-216-P2b1 Rno-Mir-216-P2b Sha-Mir-216-P2b Spt-Mir-216-P2b Sto-Mir-216-P2b Tca-Mir-216-P2 Tgu-Mir-216-P2b Tni-Mir-216-P2b Xla-Mir-216-P2b3 Xla-Mir-216-P2b4 Xtr-Mir-216-P2b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(hg38)

chr2: 55988980-55989041 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2b)

Mir-217-v2 chr2: 55982983-55983043 [-] UCSC Ensembl
Mir-217-v1 chr2: 55982984-55983042 [-] UCSC Ensembl
Mir-216-P2b chr2: 55988980-55989041 [-] UCSC Ensembl
Mir-216-P2a chr2: 56000724-56000785 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGUCUAACACGGAUGGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGAUGUUCAUACAAUCCCUCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCAAUUUCCUAGCCCUCACGA

Get precursor sequence

Structure

        10             20        30        40        50        60 
AGGUCUAACACGGAUGG-----|   GAG     U         CU   A        AUGUUCA 
                      CUGU   UUGGC UAAUCUCAG  GGC ACUGUGAG       \
                      GACA   AAUCG AUUAGGGUC  CUG UGACACUC       U
AGCACUCCCGAUCCUUUAACGA^   ---     U         U-   G        CCUAACA 
120       110       100           90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Mature sequence

Hsa-Mir-216-P2b_5p

mirBase accession

MIMAT0000273

Sequence

0- UAAUCUCAGCUGGCAACUGUGAG -23

Get sequence

Proposed targets

microrna.org: MIMAT0000273
TargetScanVert: hsa-miR-216a-5p
miRDB: MIMAT0000273

Star sequence

Hsa-Mir-216-P2b_3p*

mirBase accession

MIMAT0022844

Sequence

40- CACAGUGGUCUCUGGGAUUAUG -62

Get sequence

Proposed targets

TargetScanVert: hsa-miR-216a-3p
miRDB: MIMAT0022844