Mir-216-P2b

MirGeneDB ID

Dno-Mir-216-P2b

Family name

MIR-216 (all species)

Seed

AAUCUCA

Species

Nine-banded armadillo (Dasypus novemcinctus)

MiRBase ID

dno-mir-216a

Paralogues

Dno-Mir-216-P2a

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2b Ami-Mir-216-P2b Asu-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2b Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2b Cgi-Mir-216-P2 Cli-Mir-216-P2b Cmi-Mir-216-P2b Cpi-Mir-216-P2b Cpo-Mir-216-P2b Dan-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dpu-Mir-216-P2 Dre-Mir-216-P2b Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2b1 Efe-Mir-216-P2 Ete-Mir-216-P2b Gga-Mir-216-P2b Gja-Mir-216-P2b Gmo-Mir-216-P2b Hme-Mir-216-P2 Hsa-Mir-216-P2b Isc-Mir-216-P2 Lch-Mir-216-P2b Lgi-Mir-216-P2 Loc-Mir-216-P2b Mal-Mir-216-P2b Mdo-Mir-216-P2b Mml-Mir-216-P2b Mmu-Mir-216-P2b Mun-Mir-216-P2b Oan-Mir-216-P2b Ocu-Mir-216-P2b Pbv-Mir-216-P2b Pma-Mir-216-P2b1 Rno-Mir-216-P2b Sha-Mir-216-P2b Spt-Mir-216-P2b Sto-Mir-216-P2b Tca-Mir-216-P2 Tgu-Mir-216-P2b Tni-Mir-216-P2b Xla-Mir-216-P2b3 Xla-Mir-216-P2b4 Xtr-Mir-216-P2b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(dasNov3)

JH567881: 176266-176327 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2b)

Mir-217-v2 JH567881: 170442-170502 [-] UCSC Ensembl
Mir-217-v1 JH567881: 170443-170501 [-] UCSC Ensembl
Mir-216-P2b JH567881: 176266-176327 [-] UCSC Ensembl
Mir-216-P2a JH567881: 186854-186915 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGUCUCACCUGGAUGGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGACGUUCAUACAAUUCCUCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCAAUUUCCUUGCCCUCAUGG

Get precursor sequence

Structure

        10             20        30        40        50        60 
AGGUCUCACCUGGAUGG-----|   GAG     U         CU   A        ACGUUCA 
                      CUGU   UUGGC UAAUCUCAG  GGC ACUGUGAG       \
                      GACA   AAUCG AUUAGGGUC  CUG UGACACUC       U
GGUACUCCCGUUCCUUUAACGA^   ---     U         U-   G        CUUAACA 
120       110       100           90         80        70