MirGeneDB ID | Cli-Mir-1-P4 |
Family name |
MIR-1 (all species) |
Seed |
GGAAUGU |
Species |
Rock pigeon (Columba livia) |
MiRBase ID |
cli-mir-1b
|
Paralogues |
Cli-Mir-1-P1
Cli-Mir-1-P2
Cli-Mir-1-P3
|
Orthologues |
Aae-Mir-1
Aca-Mir-1-P4
Ami-Mir-1-P4
Asu-Mir-1
Bfl-Mir-1
Bge-Mir-1
Bla-Mir-1
Cbr-Mir-1
Cel-Mir-1
Cgi-Mir-1
Cin-Mir-1
Cmi-Mir-1-P4
Cpi-Mir-1-P4
Cte-Mir-1
Dan-Mir-1
Dma-Mir-1
Dme-Mir-1
Dmo-Mir-1
Dpu-Mir-1
Dsi-Mir-1
Dya-Mir-1
Esc-Mir-1
Gga-Mir-1-P4
Gja-Mir-1-P4c
Gja-Mir-1-P4d
Hme-Mir-1
Isc-Mir-1
Lan-Mir-1
Lch-Mir-1-P4
Lgi-Mir-1
Mun-Mir-1-P4
Oan-Mir-1-P4
Obi-Mir-1
Ovu-Mir-1
Pbv-Mir-1-P4
Pfl-Mir-1
Pma-Mir-1-o4
Pmi-Mir-1
Sko-Mir-1
Spt-Mir-1-P4
Spu-Mir-1
Sto-Mir-1-P4
Tca-Mir-1
Tgu-Mir-1-P4
Xbo-Mir-1
Xla-Mir-1-P4a
Xla-Mir-1-P4b
Xtr-Mir-1-P4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (colLiv2) |
scaffold391: 951021-951083 [-]
|
Precursor (pre-Mir +30nt flank) |
CAGCGCCGCUCGCCUCUCCCUCCCAACCCUACAUACUUCUUCAUAUACCCAUAUGGAGUCGGCCGGCGUUAUGGAAUGUUAAGAAGUAUGUAUUUUUGGGCUGGGACCCACCCGCCACCAGCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAGCGCCGCUCGCCUCU- U-| CCC C AC UGGAGUC
CCC CCCAA UACAUACUUCUU AUAU CCAUA G
GGG GGGUU AUGUAUGAAGAA UGUA GGUAU G
ACGACCACCGCCCACCCA UC^ UUU U A- UGCGGCC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Cli-Mir-1-P4_5p* |
mirBase accession | MIMAT0038394 |
Sequence |
0- ACAUACUUCUUCAUAUACCCAUA -23
Get sequence
|
Mature sequence |
Cli-Mir-1-P4_3p |
mirBase accession | MIMAT0038395 |
Sequence |
41- UGGAAUGUUAAGAAGUAUGUAU -63
Get sequence
|